A package that contains the bait to prey directed graphs for protein-protein interactions.

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Documentation for package ‘ppiData’ version 0.1.14

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bpExperimentNames A Character Vector Containing the Names of the 13 Graph Objects Stored
Cagney2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by
collectIntactPPIData A function that parses the Intact repository for bait to prey
createBPList A function to create the Bait to Prey association list.
Gavin2002BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected
Gavin2006BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected
Hazbun2003BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by
Ho2002BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected
intAct2Sys A function that maps the Intact ID's to the first org.Sc.sgd systematic
intActPPIData A data set documenting the output of collectIntactPPIData
Ito2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by
ItoCore2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by
ItoFull2001BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by
Krogan2004BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected
Krogan2006BPGraph A directed Graph for the AP-MS Bait to Prey Interaction data detected
map2Systematic A function that maps the Intact ID's to Yeast Systematic Names if
map2Systematic2 A secondary function that maps the Intact ID's to Yeast Systematic
ppipred Protein-protein predictions
stochasticBaits Lists of viable baits in each bait to prey dataset which are
sWAC2Sys A data set that contains the translation between Swiss accension codes
tableList A list of tables for the downloaded and parsed xml files from the
Tong2002BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by
twTableAPMS A table to look at the permutation statistics of pairs of Y2H
twTableY2H A table to look at the permutation statistics of pairs of Y2H
Uetz2000BPGraph1 A directed Graph for the Y2H Bait to Prey Interaction data detected by
Uetz2000BPGraph2 A directed Graph for the Y2H Bait to Prey Interaction data detected by
viableBaits Lists of viable prey or baits in each bait to prey dataset
viablePrey Lists of viable prey or baits in each bait to prey dataset
y2h A data set documenting the bait to prey associations for the y2h
y2hSysGW A data object documenting the bait to prey associations for the y2h
Zhao2005BPGraph A directed Graph for the Y2H Bait to Prey Interaction data detected by