$,BrowserSession-method	browserSession-class
$<-,BrowserSession-method	browserSession-class
activeView	activeView-methods
activeView,BrowserSession-method	activeView-methods
activeView,UCSCView-method	activeView-methods
activeView-methods	activeView-methods
activeView<-	activeView-methods
activeView<--methods	activeView-methods
BasicTrackLine-class	basicTrackLine-class
Bed15TrackLine-class	Bed15TrackLine-class
BigWigSelection	BigWigSelection-class
BigWigSelection-class	BigWigSelection-class
blocks	blocks-methods
blocks,RangedData-method	blocks-methods
blocks-methods	blocks-methods
browseGenome	browseGenome
browseGenome,GRanges-method	browseGenome
browseGenome,missing-method	browseGenome
browseGenome,RangedDataORRangedDataList-method	browseGenome
browserSession	browserSession-methods
browserSession,BrowserView-method	browserSession-methods
browserSession,character-method	browserSession-methods
browserSession,missing-method	browserSession-methods
browserSession,UCSCTableQuery-method	UCSCTableQuery-class
BrowserSession-class	browserSession-class
browserSession-methods	browserSession-methods
browserSession<-	UCSCTableQuery-class
browserSession<-,UCSCTableQuery,UCSCSession-method	UCSCTableQuery-class
browserView	browserView-methods
browserView,UCSCSession-method	browserView-methods
BrowserView-class	browserView-class
browserView-methods	browserView-methods
BrowserViewList	BrowserViewList-class
BrowserViewList-class	BrowserViewList-class
browserViews	browserViews-methods
browserViews,UCSCSession-method	browserViews-methods
browserViews-methods	browserViews-methods
Chain-class	Chain-class
ChainBlock-class	Chain-class
characterORconnection-class	connection-class
chrom	RangedData-methods
chrom,GRanges-method	RangedData-methods
chrom,RangedData-method	RangedData-methods
chrom,RangesList-method	RangesList-methods
chrom<-	RangedData-methods
chrom<-,GRanges-method	RangedData-methods
chrom<-,RangedData-method	RangedData-methods
chrom<-,RangesList-method	RangesList-methods
class:Chain	Chain-class
class:ChainBlock	Chain-class
coerce,BasicTrackLine,character-method	basicTrackLine-class
coerce,BasicTrackLine,GraphTrackLine-method	wigTrackLine-class
coerce,Bed15TrackLine,character-method	Bed15TrackLine-class
coerce,character,BasicTrackLine-method	basicTrackLine-class
coerce,character,Bed15TrackLine-method	Bed15TrackLine-class
coerce,character,GraphTrackLine-method	wigTrackLine-class
coerce,character,TrackLine-method	ucscTrackLine-class
coerce,GRanges,BigWigSelection-method	BigWigSelection-class
coerce,GraphTrackLine,BasicTrackLine-method	wigTrackLine-class
coerce,GraphTrackLine,character-method	wigTrackLine-class
coerce,RangedData,UCSCData-method	UCSCData-class
coerce,RangesList,BigWigSelection-method	BigWigSelection-class
coerce,TrackLine,character-method	ucscTrackLine-class
connection-class	connection-class
cpneTrack	cpneTrack
export	export
export,ANY,character,character-method	export
export,ANY,character,missing-method	export
export,ANY,connection,character-method	export
export,ANY,missing,character-method	export
export.bed	export.gff
export.bed,ANY,ANY-method	export.gff
export.bed,RangedData,characterORconnection-method	export.gff
export.bed,RangedDataList,ANY-method	export.gff
export.bed,UCSCData,ANY-method	UCSCData-class
export.bed15	export.gff
export.bed15,ANY-method	export.gff
export.bed15,UCSCData-method	UCSCData-class
export.bedGraph	export.gff
export.bedGraph,ANY-method	export.gff
export.bw	export.gff
export.bw,ANY,ANY-method	export.gff
export.bw,RangedData,character-method	export.gff
export.gff	export.gff
export.gff,ANY,ANY-method	export.gff
export.gff,RangedData,characterORconnection-method	export.gff
export.gff,UCSCData,characterORconnection-method	UCSCData-class
export.gff1	export.gff
export.gff1,ANY-method	export.gff
export.gff2	export.gff
export.gff2,ANY-method	export.gff
export.gff3	export.gff
export.gff3,ANY-method	export.gff
export.ucsc	export.gff
export.ucsc,ANY,ANY-method	export.gff
export.ucsc,RangedData,ANY-method	export.gff
export.ucsc,RangedDataList,ANY-method	export.gff
export.ucsc,UCSCData,characterORconnection-method	UCSCData-class
export.wig	export.gff
export.wig,ANY-method	export.gff
file-class	connection-class
formatDescription	UCSCSchema-class
formatDescription,UCSCSchema-method	UCSCSchema-class
genome	RangedData-methods
genome,BrowserSession-method	browserSession-class
genome,GRanges-method	RangedData-methods
genome,RangedData-method	RangedData-methods
genome,RangesList-method	RangesList-methods
genome,UCSCSchema-method	UCSCSchema-class
genome,UCSCSession-method	ucscSession-class
genome<-	RangedData-methods
genome<-,BrowserSession-method	browserSession-class
genome<-,GRanges-method	RangedData-methods
genome<-,RangedData-method	RangedData-methods
genome<-,RangesList-method	RangesList-methods
genome<-,UCSCSession-method	ucscSession-class
genomeBrowsers	genomeBrowsers
GenomicData	RangedData-methods
GenomicRanges	RangesList-methods
GenomicSelection	GenomicSelection
getTable	UCSCTableQuery-class
getTable,UCSCTableQuery-method	UCSCTableQuery-class
GRangesForBSGenome	GRangesForUCSCGenome
GRangesForUCSCGenome	GRangesForUCSCGenome
GraphTrackLine-class	wigTrackLine-class
gzfile-class	connection-class
import	import
import,character,character,ANY-method	import
import,character,missing,ANY-method	import
import,connection,character,ANY-method	import
import,missing,ANY,character-method	import
import.bed	import.gff
import.bed,character-method	import.gff
import.bed,connection-method	import.gff
import.bed15	import.gff
import.bed15,ANY-method	import.gff
import.bedGraph	import.gff
import.bedGraph,ANY-method	import.gff
import.bw	import.gff
import.bw,character-method	import.gff
import.chain	Chain-class
import.chain,character-method	Chain-class
import.gff	import.gff
import.gff,characterORconnection-method	import.gff
import.gff1	import.gff
import.gff1,ANY-method	import.gff
import.gff2	import.gff
import.gff2,ANY-method	import.gff
import.gff3	import.gff
import.gff3,ANY-method	import.gff
import.ucsc	import.gff
import.ucsc,characterORconnection-method	import.gff
import.wig	import.gff
import.wig,ANY-method	import.gff
initialize,UCSCData-method	UCSCData-class
initialize,UCSCSession-method	ucscSession-class
liftOver	liftOver
liftOver,GRanges,Chain-method	liftOver
names,UCSCTableQuery-method	UCSCTableQuery-class
names<-,UCSCTableQuery-method	UCSCTableQuery-class
nrow,UCSCSchema-method	UCSCSchema-class
offset,ChainBlock-method	Chain-class
pipe-class	connection-class
range,BrowserSession-method	browserSession-class
range,ucscCart-method	ucscSession-class
range,UCSCSession-method	ucscSession-class
range,UCSCTableQuery-method	UCSCTableQuery-class
range,UCSCView-method	ucscView-class
range<-	ucscSession-class
range<-,UCSCSession-method	ucscSession-class
range<-,UCSCTableQuery-method	UCSCTableQuery-class
range<-,UCSCView-method	ucscView-class
RangedData-methods	RangedData-methods
ranges,ChainBlock-method	Chain-class
RangesList-methods	RangesList-methods
reversed	Chain-class
reversed,ChainBlock-method	Chain-class
score,ChainBlock-method	Chain-class
sequence<-	laySequence-methods
sequence<--methods	laySequence-methods
show,BrowserSession-method	browserSession-class
show,BrowserView-method	browserView-class
show,TrackLine-method	ucscTrackLine-class
show,UCSCData-method	UCSCData-class
show,UCSCTableQuery-method	UCSCTableQuery-class
sockconn-class	connection-class
space,ChainBlock-method	Chain-class
tableName	UCSCTableQuery-class
tableName,UCSCSchema-method	UCSCSchema-class
tableName,UCSCTableQuery-method	UCSCTableQuery-class
tableName<-	UCSCTableQuery-class
tableName<-,UCSCTableQuery-method	UCSCTableQuery-class
tableNames	UCSCTableQuery-class
tableNames,UCSCTableQuery-method	UCSCTableQuery-class
targets	targets
terminal-class	connection-class
textConnection-class	connection-class
track	UCSCTableQuery-class
track,UCSCSession-method	ucscSession-class
track,UCSCTableQuery-method	UCSCTableQuery-class
track<-	layTrack-methods
track<-,BrowserSession,ANY-method	layTrack-methods
track<-,BrowserSession,RangedData-method	layTrack-methods
track<-,BrowserSession,RangedDataList-method	layTrack-methods
track<-,UCSCSession,RangedDataList-method	layTrack-methods
track<--methods	layTrack-methods
TrackLine-class	ucscTrackLine-class
trackName	UCSCTableQuery-class
trackName,UCSCTableQuery-method	UCSCTableQuery-class
trackName<-	UCSCTableQuery-class
trackName<-,UCSCTableQuery-method	UCSCTableQuery-class
trackNames	tracks-methods
trackNames,UCSCSession-method	tracks-methods
trackNames,UCSCTableQuery-method	UCSCTableQuery-class
trackNames,UCSCTrackModes-method	tracks-methods
trackNames,UCSCView-method	tracks-methods
trackNames-methods	tracks-methods
trackNames<-	tracks-methods
trackNames<-,UCSCTrackModes-method	tracks-methods
trackNames<-,UCSCView-method	tracks-methods
trackNames<--methods	tracks-methods
UCSCData-class	UCSCData-class
ucscGenomes	ucscGenomes
ucscSchema	UCSCTableQuery-class
ucscSchema,UCSCSchemaDescription-method	UCSCSchema-class
ucscSchema,UCSCTableQuery-method	UCSCTableQuery-class
UCSCSchema-class	UCSCSchema-class
UCSCSession-class	ucscSession-class
ucscTableQuery	UCSCTableQuery-class
ucscTableQuery,UCSCSession-method	UCSCTableQuery-class
UCSCTableQuery-class	UCSCTableQuery-class
ucscTrackModes	ucscTrackModes-methods
ucscTrackModes,character-method	ucscTrackModes-methods
ucscTrackModes,missing-method	ucscTrackModes-methods
ucscTrackModes,UCSCSession-method	ucscTrackModes-methods
ucscTrackModes,ucscTracks-method	ucscTrackModes-methods
ucscTrackModes,UCSCView-method	ucscTrackModes-methods
UCSCTrackModes-class	ucscTrackModes-class
ucscTrackModes-methods	ucscTrackModes-methods
ucscTrackModes<-	ucscTrackModes-methods
ucscTrackModes<-,UCSCView,character-method	ucscTrackModes-methods
ucscTrackModes<-,UCSCView,UCSCTrackModes-method	ucscTrackModes-methods
ucscTrackModes<--methods	ucscTrackModes-methods
UCSCView-class	ucscView-class
unz-class	connection-class
url-class	connection-class
visible	browserView-class
visible,BrowserView-method	browserView-class
visible,UCSCView-method	ucscView-class
visible<-	browserView-class
visible<-,BrowserView-method	browserView-class
visible<-,UCSCView-method	ucscView-class
[,UCSCTrackModes-method	ucscTrackModes-class
[<-,UCSCTrackModes,ANY,ANY,ANY-method	ucscTrackModes-class
[[,BrowserSession-method	browserSession-class
[[<-,BrowserSession-method	browserSession-class
