MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Documentation for package ‘mosaics’ version 1.0.1

mosaics-package	MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
bdBin-method	Class "MosaicsPeak"
BinData-class	Class "BinData"
coord-method	Class "BinData"
empFDR-method	Class "MosaicsPeak"
estimates	Extract estimates of the fitted MOSAiCS model
estimates-method	Extract estimates of the fitted MOSAiCS model
export	Export peak calling results to text files
export-method	Export peak calling results to text files
gcContent-method	Class "BinData"
input-method	Class "BinData"
mappability-method	Class "BinData"
mosaics	MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
mosaicsFit	Fit MOSAiCS model
MosaicsFit-class	Class "MosaicsFit"
mosaicsFit-method	Fit MOSAiCS model
mosaicsPeak	Call peaks based on fitted MOSAiCS model
MosaicsPeak-class	Class "MosaicsPeak"
mosaicsPeak-method	Call peaks based on fitted MOSAiCS model
plot-method	Class "BinData"
plot-method	Class "MosaicsFit"
print-method	Class "BinData"
print-method	Class "MosaicsFit"
print-method	Class "MosaicsPeak"
readBins	Import bin-level ChIP-sep data
show-method	Class "BinData"
show-method	Class "MosaicsFit"
show-method	Class "MosaicsPeak"
tagCount-method	Class "BinData"