Genome sequencing project metadata

Documentation for package ‘genomes’ version 1.8.1

%like%	Pattern matching using wildcards
acc2date	Retrieve release dates from NCBI's revision history
doublingTime	Doubling time for genome projects
genomes	Introduction to the genomes package
genomes-lines	Add lines to a genomes plot
genomes-plot	Genome table plots by release date
genomes-subset	Subset genome tables
genomes-summary	Genome table summaries
genomes-update	Genome table updates
genus	Extract the genus name
image2	Display a matrix image
lenvs	Metagenome sequencing projects at NCBI
leuks	Eukaryotic genome projects at NCBI
like	Pattern matching using wildcards
lines.genomes	Add lines to a genomes plot
lproks	Microbial genome projects at NCBI
month	Parse a date string
plot.genomes	Genome table plots by release date
plotby	Plot groups of genomes by release date
print.genomes	Print genome tables
pub2date	Retrieve the published date from NCBI's PubMed database
pubmed	Complete microbial genome publications in PubMed
revhist	Complete microbial genome release dates in Revision History
species	Extract the species name
subset.genomes	Subset genome tables
summary.genomes	Genome table summaries
table2	Format and sort a contigency table
taxid2names	Retreive taxonomy names from NCBI
term2neighbor	Retrieve genome neighbors from NCBI
term2summary	Retrieve genome summaries from NCBI
top	Find the most common values
update.genomes	Genome table updates
virus	Virus genomes at NCBI
year	Parse a date string