#  All functions exported other than those starting with "."
exportPattern("^[^\\.]")

exportClasses("DGEList","DGEExact","TopTags","DGEGLM","DGELRT")
exportMethods("show")

importFrom(limma,is.fullrank,removeExt,trimWhiteSpace,decideTests,loessFit,squeezeVar, zscoreGamma)
importClassesFrom(limma, "LargeDataObject", "MArrayLM", "TestResults")
importMethodsFrom(limma, "show")

S3method(as.matrix,DGEList)
S3method(dim,DGEList)
S3method(dim,DGEExact)
S3method(dim,TopTags)
S3method(dim,DGEGLM)
S3method(dim,DGELRT)
S3method(dimnames,DGEList)
S3method("dimnames<-",DGEList)
S3method(length,DGEList)
S3method(length,DGEExact)
S3method(length,TopTags)
S3method(length,DGEGLM)
S3method(length,DGELRT)
