Package: ddCt
Title: The ddCt Algorithm for the Analysis of Quantitative Real-Time
        PCR (qRT-PCR)
Version: 1.6.0
Date: 2010-08-23
Author: Jitao David Zhang, Rudolf Biczok and Markus Ruschhaupt
Description: The Delta-Delta-Ct (ddCt) Algorithm is an approximation
        method to determine relative gene expression with quantitative
        real-time PCR (qRT-PCR) experiments. Compared to other
        approaches, it requires no standard curve for each
        primer-target pair, therefore reducing the working load and yet
        returning accurate enough results as long as the assumptions of
        the amplification efficiency hold. The ddCt package implements
        a pipeline to collect, analyse and visualize qRT-PCR results,
        for example those from TaqMan SDM software, mainly using the
        ddCt method. The pipeline can be either invoked by a script in
        command-line or through the API consisting of S4-Classes,
        methods and functions.
Maintainer: Jitao David Zhang <j.zhang@dkfz.de>
biocViews: GeneExpression, DifferentialExpression, RT-PCR
License: LGPL-3
Depends: R (>= 2.3.0), Biobase (>= 1.10.0), RColorBrewer (>= 0.1-3),
        xtable, lattice, methods
Collate: AllClasses.R AllGenerics.R AllFunctions.R AllMethods.R
        AllGlobals.R absoluteQ.R ddCtSplit.R output.R visualization.R
Packaged: 2011-04-14 09:57:00 UTC; biocbuild
Built: R 2.13.0; ; 2011-04-14 15:14:16 UTC; windows
