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| clusterProfiler-package | statistical analysis and visulization of functional profiles for genes and... |
| clusterProfiler | statistical analysis and visulization of functional profiles for genes and... |
| compareCluster | Compare gene clusters functional profile... |
| compareClusterResult-class | Class "compareClusterResult"... |
| enrichGO | GO Enrichment Analysis of a gene set. |
| enrichGOResult-class | Class "enrichGOResult"... |
| enrichKEGG | KEGG Enrichment Analysis of a gene set. |
| enrichKEGGResult-class | Class "enrichKEGGResult"... |
| gcSample | Datasets... |
| geneID2geneName | convert gene IDs to gene Names |
| getGO2ExtID | query genes annotated by given GOIDs |
| getGOLevel | get GOIDs at a specific level |
| getRatio | getRatio |
| GO2Term | Mapping GOIDs to GO Terms |
| groupGO | Functional Profile of a gene set at specific GO level. |
| groupGOResult-class | Class "groupGOResult"... |
| HyperG | hypergeometric test |
| path2Name | convert KEGG pathway ID to pathway Name |
| plot | plot method |
| plot-method | Class "compareClusterResult"... |
| plot-method | Class "enrichGOResult"... |
| plot-method | Class "enrichKEGGResult"... |
| plot-method | Class "groupGOResult"... |
| plotting.barplot | internal function of barplot |
| plotting.clusterProfile | plotting-clusterProfile |
| pModify | changing title and font size |
| show | show method |
| show-method | Class "compareClusterResult"... |
| show-method | Class "enrichGOResult"... |
| show-method | Class "enrichKEGGResult"... |
| show-method | Class "groupGOResult"... |
| summary | summary method |
| summary-method | Class "compareClusterResult"... |
| summary-method | Class "enrichGOResult"... |
| summary-method | Class "enrichKEGGResult"... |
| summary-method | Class "groupGOResult"... |