useDynLib(Rsamtools, .registration=TRUE)

importFrom(utils, read.table)           # normalizePath --> base in R-2.13

import(IRanges)

importFrom(GenomicRanges, GRanges, GappedAlignments)

importMethodsFrom(GenomicRanges, seqnames, strand)

importClassesFrom(GenomicRanges, GRanges, GappedAlignments)

importClassesFrom(Biostrings, file, connection, DNAStringSet,
                  BStringSet, PhredQuality)

importFrom(Biostrings, DNA_ALPHABET, read.DNAStringSet,
           DNAStringSet, BStringSet, PhredQuality)

exportClasses(ScanBamParam, BamViews, BamFile)

exportPattern("^[^\\.]")

exportMethods(length, names, "[", "[[", show)

S3method(close, BamFile)
