RPA: probe reliability and differential gene expression analysis

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Documentation for package ‘RPA’ version 1.8.01

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RPA-package RPA: probabilistic analysis of probe reliability and gene expression
estimate.affinities Probe affinity estimation
get.probe.noise.estimates Fetch probe-level noise estimates from an rpa object
plot-method Class "rpa.list"
plot.rpa Plot RPA results and probe-level data for a specific probeset.
RPA RPA: probabilistic analysis of probe reliability and gene expression
rpa RPA for preprocessing.
rpa-class Class "rpa"
rpa.fit rpa.fit
rpa.fit-class Class "rpa.fit"
RPA.iteration Estimating model parameters d and sigma2.
rpa.list-class Class "rpa.list"
rpa.plot Plot RPA results and probe-level data for a specified probeset.
RPA.pointestimate Computing point estimate for the model parameters for all probe sets.
RPA.preprocess Preprocess AffyBatch object for RPA.
rpa.priors-class Class "rpa.priors"
rpa2eset Coerce 'rpa' object into an 'ExpressionSet'
set.priors Set prior parameter object for RPA.
show-method Class "rpa"
[-method Class "rpa"
[[-method Class "rpa"