importFrom("Biobase", "exprs")
importFrom("GGBase", "smList")
importFrom("AnnotationDbi", "get", "mget")

importClassesFrom("Biobase", "eSet", "VersionedBiobase", "Versioned")
importClassesFrom("GGBase", "cnumOrMissing")

importClassesFrom(IRanges, RangedData)
importFrom(IRanges, RangedData, space, findOverlaps)

importFrom(stats,
           as.formula, formula, lm, resid)

exportMethods(gwSnpTests, topFeats, show)

export(eqtlTests, cisProxScores, clipPCs, pcChooser, permEx,
	topFeats, vcf2sm, externalize, getSS, manhPlot, makeDiagDirector,
	interleave2cis, exome_minp, topSnps, checkCommonSNPs, makeCommonSNPs,
	relocate)

exportClass(eqtlTestsManager, multiCisDirector, cisProxScores)

