GGtools-package	GGtools-package
checkCommonSNPs	makeCommonSNPs
chunksize	gwSnpTests
chunksize-class	gwSnpTests
cisProxScores	cisProxScores
cisProxScores-class	cisProxScores-class
cisTransDirector-class	eqtlTestsManager-class
clipPCs	clipPCs
degnerASE01	degnerASE01
eqtlTests	eqtlTests
eqtlTestsManager-class	eqtlTestsManager-class
ex6	ex6
exome_minp	exome_minp
externalize	externalize
getSS	externalize
GGtools	GGtools-package
gwSnpTests	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing,ANY-method	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing,missing-method	gwSnpTests
gwSnpTests,formula,smlSet,cnumOrMissing-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,ANY-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,chunksize-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth,missing-method	gwSnpTests
gwSnpTests,formula,smlSet,snpdepth-method	gwSnpTests
hla2set	hla2set
hmceuB36.2021	hmceuB36.2021
imphm3_1KG_20_mA2	imphm2_1KG_20
imphm3_1KG_20_mA5	imphm2_1KG_20
interleave2cis	cisProxScores
m20	m20
makeCommonSNPs	makeCommonSNPs
makeDiagDirector	multiCisDirector-class
manhPlot	manhPlot
mcisProxScores	cisProxScores
mkCisTransDirector	mkCisTransDirector
multffCT	multffCT
multiCisDirector-class	multiCisDirector-class
pcChooser	pcChooser
permEx	permEx
plot,cwSnpScreenResult,missing-method	plot-methods
plot,filteredGwSnpScreenResult,ANY-method	plot-methods
plot,filteredMultiGwSnpScreenResult,ANY-method	plot-methods
plot,snp.reg.imputation,missing-method	plot-methods
probeNames	eqtlTestsManager-class
probeNames,cisTransDirector-method	eqtlTestsManager-class
probeNames,eqtlTestsManager-method	eqtlTestsManager-class
relocate	relocate
residTests	gwSnpTests
residTests,cwSnpScreenResult,smlSet,formula,missing-method	gwSnpTests
show,cisProxScores-method	cisProxScores-class
show,cisTransDirector-method	eqtlTestsManager-class
show,eqtlTestsManager-method	eqtlTestsManager-class
show,metaVCF-method	vcf2sm
show,multiCisDirector-method	multiCisDirector-class
strMultPop	strMultPop
topFeats	X2chunk
topFeats,genesym-method	X2chunk
topFeats,probeId-method	X2chunk
topFeats,rsid-method	X2chunk
topSnps	topSnps-methods
topSnps,cwSnpScreenResult-method	topSnps-methods
topSnps,gwSnpScreenResult-method	topSnps-methods
topSnps-methods	topSnps-methods
vcf2sm	vcf2sm
X2chunk	X2chunk
[,cisTransDirector,character,character,ANY-method	eqtlTestsManager-class
[,cisTransDirector,character,missing,ANY-method	eqtlTestsManager-class
[,cisTransDirector,missing,character,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,ANY,ANY,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,missing,probeId,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,rsid,missing,ANY,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,rsid,missing,ANY-method	eqtlTestsManager-class
[,eqtlTestsManager,rsid,probeId,ANY-method	eqtlTestsManager-class
