alias,gt.object-method	gt.object-class
alias<-	gt.object-class
alias<-,gt.object-method	gt.object-class
annotation.vandeVijver	v4_annotation.vandeVijver
bbase	goodnessoffit
checkerboard	v4_checkerboard
coefficients,mlogit-method	mlogit
combine,gt.result,gt.result-method	v4_gt.result-class
comparative	comparative
covariates	diagnostics
diagnostics	diagnostics
draw	multtest
features	diagnostics
findFocus	multtest
fit	v4_gt.result-class
fit,gt.result-method	v4_gt.result-class
fitted.values,mlogit-method	mlogit
focusLevel	multtest
geneplot	v4_geneplot
genesets	v4_gt.result-class
genesets,GOstructure-method	v4_GOstructure
getFocus	v4_getFocus
getK	goodnessoffit
getPS	goodnessoffit
globaltest	v4_globaltest
GOstructure	v4_GOstructure
GOstructure-class	v4_GOstructure
gt	gt
gt.barplot	v4_gt.barplot-class
gt.barplot-class	v4_gt.barplot-class
gt.multtest	v4_multtest
gt.object	gt.object-class
gt.object-class	gt.object-class
gt.options	gtoptions
gt.result	v4_gt.result-class
gt.result-class	v4_gt.result-class
gtBroad	genesettesting
gtConcept	genesettesting
gtGO	genesettesting
gtI	goodnessoffit
gtK	goodnessoffit
gtKEGG	genesettesting
gtPS	goodnessoffit
hist,gt.object-method	gt.object-class
hist,gt.result-method	v4_gt.result-class
inheritance	multtest
leafNodes	multtest
length,GOstructure-method	v4_GOstructure
length,gt.barplot-method	v4_gt.barplot-class
length,gt.object-method	gt.object-class
length,gt.result-method	v4_gt.result-class
makeGOstructure	v4_getFocus
mlogit	mlogit
mlogit-class	mlogit
model.matrix,gt.object-method	gt.object-class
names,gt.barplot-method	v4_gt.barplot-class
names,gt.object-method	gt.object-class
names,gt.result-method	v4_gt.result-class
names<-,gt.barplot-method	v4_gt.barplot-class
names<-,gt.object-method	gt.object-class
names<-,gt.result-method	v4_gt.result-class
p.adjust,gt.object-method	gt.object-class
p.value	gt.object-class
p.value,gt.object-method	gt.object-class
p.value,gt.result-method	v4_gt.result-class
permutations	v4_permutations
plot,gt.barplot-method	v4_gt.barplot-class
regressionplot	v4_regressionplot
repdes	goodnessoffit
residuals,mlogit-method	mlogit
result	gt.object-class
result,gt.barplot-method	v4_gt.barplot-class
result,gt.object-method	gt.object-class
result,gt.result-method	v4_gt.result-class
sampleplot	v4_sampleplot
sampling	v4_sampling
scale,gt.barplot-method	v4_gt.barplot-class
show,GOstructure-method	v4_GOstructure
show,gt.barplot-method	v4_gt.barplot-class
show,gt.object-method	gt.object-class
show,gt.result-method	v4_gt.result-class
show,mlogit-method	mlogit
size	gt.object-class
size,gt.object-method	gt.object-class
size,gt.result-method	v4_gt.result-class
sort,gt.barplot-method	v4_gt.barplot-class
sort,gt.object-method	gt.object-class
sort,gt.result-method	v4_gt.result-class
subjects	diagnostics
subsets	gt.object-class
subsets,gt.object-method	gt.object-class
summary,gt.object-method	gt.object-class
summary,mlogit-method	mlogit
vandeVijver	v4_vandeVijver
weights,gt.object-method	gt.object-class
z.score	v4_gt.barplot-class
z.score,gt.barplot-method	v4_gt.barplot-class
z.score,gt.object-method	gt.object-class
z.score,gt.result-method	v4_gt.result-class
[,gt.barplot-method	v4_gt.barplot-class
[,gt.object-method	gt.object-class
[,gt.result-method	v4_gt.result-class
[[,gt.object-method	gt.object-class
