Package: globaltest
Version: 5.6.1
Date: 2011-06-21
Title: Testing groups of covariates/features for association with a
        response variable, with applications to gene set testing
Author: Jelle Goeman <j.j.goeman@lumc.nl> and Jan Oosting
        <j.oosting@lumc.nl>
Maintainer: Jelle Goeman <j.j.goeman@lumc.nl>
Depends: methods
Imports: Biobase (>= 2.5.5), survival, AnnotationDbi, annotate,
        multtest, graphics
Suggests: vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db,
        lungExpression, org.Hs.eg.db, annotate, Biobase (>= 2.5.5),
        survival, GSEABase, mboost, penalized
Description: The global test tests groups of covariates (or features)
        for association with a response variable. This package
        implements the test with diagnostic plots and multiple testing
        utilities, along with several functions to facilitate the use
        of this test for gene set testing of GO and KEGG terms.
License: GPL (>= 2)
biocViews: Microarray, OneChannel, Bioinformatics,
        DifferentialExpression, GO, Pathways
Collate: gt-object.R mlogit.R comparative.R diagnosticplots.R
        focuslevel.R generalizedFdistribution.R genesettesting.R gt.R
        inheritance.R models.R options.R utilities.R goodnessoffit.R
        v4_000.R v4_gtresult.R v4_gtbarplot.R v4_internal.R
        v4_checkerboard.R v4_geneplot.R v4_globaltest.R v4_multtest.R
        v4_permutations.R v4_regressionplot.R v4_sampleplot.R
        v4_sampling.R v4_GOstructure.R
LazyLoad: yes
URL: http://www.msbi.nl/goeman
Packaged: 2011-07-02 17:14:30 UTC; biocbuild
Built: R 2.13.0; ; 2011-07-03 01:01:43 UTC; unix
