Package: gene2pathway
Version: 2.2.0
Date: 2011-03-29
Title: Prediction of KEGG pathway membership for individual genes based
        on InterPro domain signatures
Author: Holger Froehlich <frohlich@bit.uni-bonn.de>
Description: The package takes a list of genes and predicts to which
        KEGG pathway each gene maps to. This is done by looking at the
        InterPro domains of each gene. Each prediction is assigned a
        confidence score. The package also allows to predict connected
        component membership of genes within signaling pathways.
        Separate models for each organism supported by KEGG can be
        trained.
Maintainer: Holger Froehlich <frohlich@bit.uni-bonn.de>
Reference: H. Froehlich, M. Fellmann, H. Sueltmann, A. Poustka, T.
        Beissbarth, Predicting Pathway Membership via Domain
        Signatures, Bioinformatics, 24:2137-2142, 2008
Depends: R (>= 2.10.0), kernlab (>= 0.9), biomaRt (>= 1.12.1), KEGGSOAP
        (>= 1.12.0), RBGL, AnnotationDbi,org.Dm.eg.db, keggorthology
        (>= 2.0)
Enhances: doMC
Imports: SSOAP, RCurl
LazyLoad: Yes
biocViews: Microarray, Bioinformatics, Classification,
        GraphsAndNetworks, Pathways
License: GPL (>= 2)
Packaged: 2011-04-15 10:31:14 UTC; biocbuild
Built: R 2.13.0; ; 2011-04-15 16:59:17 UTC; unix
