# GO-terms Semantic Similarity Measures

## Documentation for package ‘GOSemSim’ version 1.10.2

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

GOSemSim-package | Gene Ontology-based Sematic Similarity Measures
clusterSim | Semantic Similarity Between Two Gene Clusters
computeIC | Class "Params"
computeIC-method | Class "Params"
GeneClusterSet-class | Class "GeneClusterSet"
GeneSet-class | Class "GeneSet"
geneSim | Semantic Similarity Between two Genes
GOSemSim | Gene Ontology-based Sematic Similarity Measures
GOSet | Methods for GOSet class
GOSet-class | Class "GOSet"
GOSet-methods | Methods for GOSet class
goSim | Semantic Similarity Between Two GO Terms
IC | Information content of GO terms
Info_Contents_anopheles_BP | Information content of GO terms
Info_Contents_anopheles_CC | Information content of GO terms
Info_Contents_anopheles_MF | Information content of GO terms
Info_Contents_arabidopsis_BP | Information content of GO terms
Info_Contents_arabidopsis_CC | Information content of GO terms
Info_Contents_arabidopsis_MF | Information content of GO terms
Info_Contents_bovine_BP | Information content of GO terms
Info_Contents_bovine_CC | Information content of GO terms
Info_Contents_bovine_MF | Information content of GO terms
Info_Contents_canine_BP | Information content of GO terms
Info_Contents_canine_CC | Information content of GO terms
Info_Contents_canine_MF | Information content of GO terms
Info_Contents_chicken_BP | Information content of GO terms
Info_Contents_chicken_CC | Information content of GO terms
Info_Contents_chicken_MF | Information content of GO terms
Info_Contents_chimp_BP | Information content of GO terms
Info_Contents_chimp_CC | Information content of GO terms
Info_Contents_chimp_MF | Information content of GO terms
Info_Contents_coelicolor_BP | Information content of GO terms
Info_Contents_coelicolor_CC | Information content of GO terms
Info_Contents_coelicolor_MF | Information content of GO terms
Info_Contents_ecolik12_BP | Information content of GO terms
Info_Contents_ecolik12_CC | Information content of GO terms
Info_Contents_ecolik12_MF | Information content of GO terms
Info_Contents_ecsakai_BP | Information content of GO terms
Info_Contents_ecsakai_CC | Information content of GO terms
Info_Contents_ecsakai_MF | Information content of GO terms
Info_Contents_fly_BP | Information content of GO terms
Info_Contents_fly_CC | Information content of GO terms
Info_Contents_fly_MF | Information content of GO terms
Info_Contents_human_BP | Information content of GO terms
Info_Contents_human_CC | Information content of GO terms
Info_Contents_human_MF | Information content of GO terms
Info_Contents_malaria_BP | Information content of GO terms
Info_Contents_malaria_CC | Information content of GO terms
Info_Contents_malaria_MF | Information content of GO terms
Info_Contents_mouse_BP | Information content of GO terms
Info_Contents_mouse_CC | Information content of GO terms
Info_Contents_mouse_MF | Information content of GO terms
Info_Contents_pig_BP | Information content of GO terms
Info_Contents_pig_CC | Information content of GO terms
Info_Contents_pig_MF | Information content of GO terms
Info_Contents_rat_BP | Information content of GO terms
Info_Contents_rat_CC | Information content of GO terms
Info_Contents_rat_MF | Information content of GO terms
Info_Contents_rhesus_BP | Information content of GO terms
Info_Contents_rhesus_CC | Information content of GO terms
Info_Contents_rhesus_MF | Information content of GO terms
Info_Contents_worm_BP | Information content of GO terms
Info_Contents_worm_CC | Information content of GO terms
Info_Contents_worm_MF | Information content of GO terms
Info_Contents_xenopus_BP | Information content of GO terms
Info_Contents_xenopus_CC | Information content of GO terms
Info_Contents_xenopus_MF | Information content of GO terms
Info_Contents_yeast_BP | Information content of GO terms
Info_Contents_yeast_CC | Information content of GO terms
Info_Contents_yeast_MF | Information content of GO terms
Info_Contents_zebrafish_BP | Information content of GO terms
Info_Contents_zebrafish_CC | Information content of GO terms
Info_Contents_zebrafish_MF | Information content of GO terms
loadAnnoPkg | Class "Params"
loadAnnoPkg-method | Class "Params"
loadGOMap | Class "Params"
loadGOMap-method | Class "Params"
loadICdata | Class "Params"
loadICdata-method | Class "Params"
mclusterSim | Pairwise Semantic Similarities for a List of Gene Clusters
mgeneSim | Pairwise Semantic Similarity for a List of Genes
mgoSim | Semantic Similarity Between two GO terms lists
Params | Methods for Params class
Params-class | Class "Params"
Params-methods | Methods for Params class
setCombineMethod<- | Class "Params"
setCombineMethod<--method | Class "Params"
setMethod<- | Class "Params"
setMethod<--method | Class "Params"
setOntology<- | Class "Params"
setOntology<--method | Class "Params"
setOrganism<- | Class "Params"
setOrganism<--method | Class "Params"
sim | Methods for calculating semantic similarity
sim-method | Methods for calculating semantic similarity
sim-methods | Methods for calculating semantic similarity
[-method | Class "Params"