1m_reference_cn: a reference distribution of quantile normalized
		 intensities obtained from the nonpolymorphic probes
		 on the Affymetrix 6.0 platform

npProbesFid: a named vector of fids for the nonpolymorphic probes on
	     the Affymetrix 6.0 platform.  The names are the
	     Affymetrix identifiers.

cnProbes: matrix containing the physical coordinates (chromosome and
	  physical position) for each nonpolymorphic probe on the
	  Affymetrix 6.0 platform

snpProbes: matrix containing the physical coordinates (chromosome and
	  physical position) for each polymorphic probe on the
	  Affymetrix 6.0 platform

*index: A list of indices.  The first element of the list are indices
	 for polymorphic probes on chromosome *.  The second element
	 is a list of indices for nonpolymorphic probes on chromosome
	 *. The indices correspond to the row number of the output
	 returned by crlmm.  For instance, to extract the matrix of A
	 intensities for all polymorphic probes on chromosome 10, one
	 could do:

	 > data(list="10index")
	 > A <- crlmmResult$A
	 > A <- A[index[[1]], ]

