Computationally simulates the AP-MS technology.

Documentation for package ‘simulatorAPMS’ version 1.22.0

APComEX	An example of an ISI using apComplex on simEX
applyDeformationError	Function that handles deformed bait proteins
applyFNErrors	Function that generates stochastic False Negative Errors
applyFPErrors	Function to generate the False Postive Observations
applyStickyError	Function that takes sticky proteins and calculates FP's
compIndep	This function determines probability distribution independence between
filteredProt	A data file containing unusable proteins
fullSimEX	In Silico Interactome
missedProtEX	Vector of Protein not recorded in simEX
missedProtHMSPCI	The proteins not recorded by the ISI TSNMatrix
PPIEX	Protein-protein co-membership graph matrix
recordSticky	This function records proteins known to be sticky in the simulation of
runAPComplex	A function that calls the complex estimation function, apComplex on the
runCompIndep	Function checks the arguments and parameters for compIndep.
runSimEX	The output of the simulation with fullSimEX as the input
runSimulators	Function that sets up the ISI et al to run the simulations
simEX	An example ISI
simulator	Function sets up inputs to call all FN/FP errors on the PPCM
simulatorD	Function that simulates deformation errors
simulatorS	Function that calculates the FP sticky errors
TSNMatrix	ISI
vBaits	The baits used in HMSPCI
vBaitsEX	Example Vector of Baits
vDeformed	A deformed protein
vDeformedEX	Example vector of deformed baits
vDeformEX	Doformed Protein
vStickyEX	Sticky Proteins