assessSymmetry          A function that calcualtes some directed degree
                        statistics on graphs
bpMatrix                This function generates the Bait-Prey Matrix
                        for an protein-protein
calcInOutDegStats       This function calculates the various degree
                        statistic for a
createSummaryTables     A function to create summary statistic tables
                        for directed graphs
degreeEstimates         Estimate per-node degree in viable bait-prey
                        (VBP) graph using maximum
estErrProbMethodOfMoments
                        Estimate false positive and false negative
                        error probabilities by
estimateCCMErrorRates   Estimate false positive and false negative
                        error probabilities
estimatePPIErrorRates   Estimate false positive and false negative
                        error probabilities for
findAdjacent            A function that returns the set of prey
                        detected by a bait in a
genBPGraph              A function to generate the protein-protein
                        interaction (ppi) induced
idSystematic            A function to identify those proteins affected
                        by either stochastic or
idViableProteins        A function to determine viable baits, viable
                        preys, or homodimers
inOutScatterCharts      A function to create scatter plots of the
                        in-degree and out-degree for
nullDistDoublyTestedEdges
                        Null distribution of number of reciprocated,
                        unreciprocated and missing
ppiBuildParams4GO       A wrapper function to build a parameter class
                        for the input of the
ppiHGTest4GO            A wrapper function to implement the
                        Hypergeometric test, HyperGTest
separateExptBySize      A function to partition experiments in user
                        defined small, medium,
twPERM                  A function to compute a permutation test on a
                        two way table.h
viabilityCharts         A function to create summary bar charts for
                        directed graphs
