# Normal Uniform Differential Gene Expression detection

## Documentation for package ‘nudge’ version 1.16.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

hiv | Microarray intensity expression levels for HIV type 1 infection of CD4+
like | Microarray intensity expression levels for like-like data
neg.contr | Indicator of known truly non differentially expressed genes in the hiv
norm1a | Function for normalizing the mean of single replicate log ratios
norm1b | Function for normalizing the mean and variance (or just the variance)
norm1c | Function for normalizing the mean of average-across-replicates log
norm1d | Function for normalizing the mean and variance of
norm2c | Function for normalizing the mean of average-across-replicates log
norm2d | Function for normalizing the mean and variance of
nudge1 | Function for normalizing data, fitting a normal-uniform mixture and
nudge2 | Function for normalizing data, fitting a normal-uniform mixture and
pos.contr | Indicator of known truly differentially expressed genes in the hiv