Package: gage
Type: Package
Title: Generally Applicable Gene-set Enrichment for Pathway Analysis
Version: 2.0.0
Date: 2010-10-04
Author: Weijun Luo
Maintainer: Weijun Luo <luo@cshl.edu>
Description: GAGE is a published method for gene set or pathway
        analysis. In gage package, we provide a series of functions for
        basic GAGE analysis, result processing and presentation. We
        have also built pipeline routines for of multiple GAGE analysis
        on different comparisons or samples, the comparison of parallel
        analysis results, and even the combined analysis of
        heterogeneous data from different sources/studies. In addition,
        we also provide demo microarray data and commonly used gene set
        data based on KEGG pathways and GO terms. These funtions and
        data are also useful for gene set analysis using other methods.
biocViews: Pathways, GO, DifferentialExpression, Microarray,
        OneChannel, TwoChannel, RNAseq, DataRepresentation, Genetics,
        Bioinformatics, MultipleComparisons
Depends: graph, multtest
Suggests: gageData, GO.db, GSEABase, KEGG.db, org.Hs.eg.db
License: GPL (>=2.0)
Collate: colorpanel.R deComp.R eg2sym.R esset.grp.R essGene.R
        gageComp.R gage-internal.R gagePipe.R gagePrep.R gage.R
        gageSum.R geneData.R greenred.R gs.KSTest.R gs.tTest.R
        gs.zTest.R heatmap2.R heter.gage.R invalid.R odd.R pairData.R
        readExpData.R readList.R rownorm.R sigGeneSet.R sym2eg.R
        vennCounts.R vennDiagram2.R
LazyLoad: yes
Packaged: 2010-10-18 11:50:40 UTC; biocbuild2
Built: R 2.12.0; ; 2010-10-18 15:54:08 UTC; windows
