Package: dyebias
Title: The GASSCO method for correcting for slide-dependent
        gene-specific dye bias
Version: 1.8.0
Date: 4 Oct 2010
Author: Philip Lijnzaad and Thanasis Margaritis
Description: Many two-colour hybridizations suffer from a dye bias that
        is both gene-specific and slide-specific. The former depends on
        the content of the nucleotide used for labeling; the latter
        depends on the labeling percentage. The slide-dependency was
        hitherto not recognized, and made addressing the artefact
        impossible.  Given a reasonable number of dye-swapped pairs of
        hybridizations, or of same vs. same hybridizations, both the
        gene- and slide-biases can be estimated and corrected using the
        GASSCO method (Margaritis et al., Mol. Sys. Biol. 5:266 (2009),
        doi:10.1038/msb.2009.21)
Maintainer: Philip Lijnzaad <p.lijnzaad@umcutrecht.nl>
License: GPL-3
Depends: R (>= 1.4.1), marray, Biobase
Suggests: limma, convert, GEOquery, dyebiasexamples, methods
URL: http://www.holstegelab.nl/publications/margaritis_lijnzaad
biocViews: Microarray, TwoChannel, QualityControl, Preprocessing
Packaged: 2010-10-18 11:07:35 UTC; biocbuild2
Built: R 2.12.0; ; 2010-10-18 15:51:52 UTC; windows
