Bscore                  B score normalization
Data                    Access and replace the assayData slot of a
                        cellHTS object
KcViab                  A sample cellHTS object - D. melanogaster
                        genome-wide RNAi screen
KcViabSmall             A sample cellHTS object - D. melanogaster
                        genome-wide RNAi screen
ROC                     Creates an object of class "ROC" which can be
                        plotted as a ROC curve
ROC-class               Class that contain data that can be plotted as
                        a ROC curve.
annotate                Annotates the reagents (probes) of a cellHTS
                        object
batch                   Access and replace the batch information of a
                        cellHTS object
bdgpbiomart             Dataset with annotation of CG identifiers
cellHTS-class           A class for data from cell-based
                        high-throughput assays performed in
cellHTS2                cellHTS2 Package Overview
configurationAsScreenPlot
                        Screen plot of the plate configuration of a
                        cellHTS object
configure               Configures the plates and plate result files
convertOldCellHTS       Convert an old S3 class cellHTS object to the
                        new S4 class cellHTS
convertWellCoordinates
                        Converts different well identifiers
dualCh                  A sample cellHTS object containing dual channel
                        data
getDynamicRange         Per-plate dynamic range of a cellHTS object
getEnVisionRawData      Read a plate file obtain from EnVision Plate
                        Reader
getMeasureRepAgreement
                        Measures of agreement between plate replicates
                        from a cellHTS object
getTopTable             Generate the hit list from a scored cellHTS
                        object
getZfactor              Per-experiment Z'-factor of a cellHTS object
gseaModule              Constructor for an object of class gseaModule
imageScreen             Experiment-wide quality control plot of a
                        cellHTS object
intensityFiles          Retrieve the contents of the input files used
                        to generate a given
normalizePlates         Per-plate data transformation, normalization
                        and variance adjustment
oldKcViabSmall          A sample S3 class cellHTS object - D.
                        melanogaster genome-wide RNAi
oneRowPerId             Rearrange dataframe entries such that there is
                        exactly one row per ID.
plate                   Retrieve information related with the format of
                        a RNAi experiment
plateEffects            Access plate effects stored in a cellHTS
                        object.
plotSpatialEffects      Plate plot with the row and column offsets
                        estimated by the a spatial
readHTAnalystData       Read a set of plate results obtained from a
                        HTanalyser plate reader
readPlateList           Read a collection of plate reader data files
scoreReplicates         Scores normalized replicate values given in a
                        cellHTS object
scores2calls            Sigmoidal transformation of the score values
                        stored in a cellHTS object
settings                cellHTS2 HTML report settings
spatialNormalization    Spatial normalization
state                   Retrieve the state of a cellHTS object.
summarizeChannels       Summarization of dual-channel data
summarizeReplicates     Summarize between scored replicate values given
                        in a cellHTS object to
templateDescriptionFile
                        Creates a template description file for an RNAi
                        experiment
updateCellHTS           Update old serialized cellHTS objects.
wellAnno                Access the annotation from a cellHTS object.
write.tabdel            Wrapper to function 'write.table' used to write
                        data to a tab-delimited
writeReport             Create a directory with HTML pages of linked
                        tables and plots
writeTab                Write the data from a cellHTS object to a
                        tab-delimited file
