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| baySeq-package | Empirical Bayesian analysis of patterns of differential expression in |
| baySeq | Empirical Bayesian analysis of patterns of differential expression in |
| baySeq-class | baySeq - classes |
| baySeq-classes | baySeq - classes |
| countData | baySeq - classes |
| countData-class | baySeq - classes |
| dim-method | baySeq - classes |
| factCount | Simulated data for testing the baySeq package methods; simulated counts |
| factlibsizes | Simulated data for testing the baySeq package methods; simulated |
| getLikelihoods | Finds posterior likelihoods for each count as belonging to some |
| getLikelihoods.Dirichlet | Finds posterior likelihoods for each count as belonging to some |
| getLikelihoods.NB | Finds posterior likelihoods for each count as belonging to some |
| getLikelihoods.NBboot | Finds posterior likelihoods for each count as belonging to some |
| getLikelihoods.Pois | Finds posterior likelihoods for each count as belonging to some |
| getPosteriors | An internal function in the baySeq package for calculating posterior |
| getPriors | Estimates prior parameters for the underlying distributions of 'count' |
| getPriors.Dirichlet | Estimates prior parameters for the underlying distributions of 'count' |
| getPriors.NB | Estimates prior parameters for the underlying distributions of 'count' |
| getPriors.Pois | Estimates prior parameters for the underlying distributions of 'count' |
| getTPs | Gets the number of true positives in the top n counts selected by |
| libsizes | Simulated data for testing the baySeq package methods; simulated |
| plotMA.CD | 'MA'-plot for count data. |
| plotPosteriors | Plots the posterior likelihoods estimated for a 'countData' object |
| plotPriors | Plots the density of the log values estimated for the mean rate in the |
| show-method | baySeq - classes |
| simCount | Simulated data for testing the baySeq package methods; simulated counts |
| simSeg | Simulated data for testing the baySeq package methods; simulated counts |
| topCounts | Get the top counts corresponding to some group from a 'countData' |
| [-method | baySeq - classes |