L1.dist                 Different distances between two given vectors
L2.norm                 L2 norm of a given vector
Pval.dist               p-value of a given similarity value
RtreemixData-class      Class "RtreemixData"
RtreemixGPS-class       Class "RtreemixGPS"
RtreemixModel-class     Class "RtreemixModel"
RtreemixSim-class       Class "RtreemixSim"
RtreemixStats-class     Class "RtreemixStats"
bootstrap-methods       Method for fitting a mutagenetic trees mixture
                        model and analyzing its
comp.models             Functions for comparing the tree topologies of
                        two mutagenetic trees
comp.trees              Functions for quantifying the diversity of the
                        nontrivial trees in a
confIntGPS-methods      Method for calculating GPS values and their 95%
                        bootstrap confidence
distribution-methods    Method for generating the (scaled) probablility
                        distribution induced
fit-methods             Method for fitting mutagenetic trees mixture
                        model to a given dataset
generate-methods        Method for generating a random mutagenetic
                        trees mixture model
get.tree.levels         Function for constructing level vectors
gps-methods             Methods for predicting the GPS of given dataset
                        by using a given
hiv.data                Example of an RtreemixData object
kullback.leibler        Kullback-Leibler divergence
likelihoods-methods     Method for predicting the likelihoods of a set
                        of samples with respect
plot-methods            Method for visualizing mutagenetic trees
                        mixture models
sim-methods             Method for simulating data from a mutagenetic
                        trees mixture model
stability.sim           Stability analysis of the mutagenetic trees
                        mixture model
