RNAither-package	RNAither-package
BScore	BScore
channelPlot	channelPlot
closestToZero	closestToZero
compareHits	compareHits
compareReplicaPlates	compareReplicaPlates
compareReplicates	compareReplicates
compareReplicateSD	compareReplicateSD
compareReplicateSDPerScreen	compareReplicateSDPerScreen
controlDensity	controlDensity
controlDensityPerPlate	controlDensityPerPlate
controlDensityPerScreen	controlDensityPerScreen
controlNorm	controlNorm
createSubset	createSubset
dataset	dataset
datasetDrosophila	datasetDrosophila
discardLabtek	discardLabtek
discardWells	discardWells
divideChannels	divideChannels
divNorm	divNorm
DRQualControl	DRQualControl
eraseDataSetColumn	eraseDataSetColumn
findReplicates	findReplicates
furthestFromZero	furthestFromZero
generateDatasetFile	generateDatasetFile
generateReplicateMat	generateReplicateMat
generateRepMatNoFilter	generateRepMatNoFilter
gseaAnalysis	gseaAnalysis
header	header
headerDrosophila	headerDrosophila
hitselectionPval	hitselectionPval
hitselectionZscore	hitselectionZscore
hitselectionZscorePval	hitselectionZscorePval
incorporatepValVec	incorporatepValVec
indexSubset	indexSubset
joinDatasetFiles	joinDatasetFiles
joinDatasets	joinDatasets
LiWongRank	LiWongRank
lowessNorm	lowessNorm
mainAnalysis	mainAnalysis
makeBoxplot4PlateType	makeBoxplot4PlateType
makeBoxplotControls	makeBoxplotControls
makeBoxplotControlsPerPlate	makeBoxplotControlsPerPlate
makeBoxplotControlsPerScreen	makeBoxplotControlsPerScreen
makeBoxplotPerPlate	makeBoxplotPerPlate
makeBoxplotPerScreen	makeBoxplotPerScreen
MannWhitney	MannWhitney
multTestAdjust	multTestAdjust
numCellQualControl	numCellQualControl
orderGeneIDs	orderGeneIDs
percCellQualControl	percCellQualControl
plotBar	plotBar
plotControlHisto	plotControlHisto
plotControlHistoPerplate	plotControlHistoPerplate
plotControlHistoPerscreen	plotControlHistoPerscreen
plotHisto	plotHisto
plotHistoPerplate	plotHistoPerplate
plotHistoPerscreen	plotHistoPerscreen
plotQQ	plotQQ
plotQQperplate	plotQQperplate
plotQQperscreen	plotQQperscreen
pValVec1	pValVec1
pValVec2	pValVec2
quantileNormalization	quantileNormalization
RankProduct	RankProduct
replicatesCV	replicatesCV
replicatesSpearmancor	replicatesSpearmancor
rms	rms
RNAither	RNAither-package
saveDataset	saveDataset
saveOldIntensityColumns	saveOldIntensityColumns
savepValVec	savepValVec
scoredDataset1	scoredDataset1
scoredDataset2	scoredDataset2
SNRQualControl	SNRQualControl
spatialDistrib	spatialDistrib
spatialDistribHits	spatialDistribHits
subtractBackground	subtractBackground
sumChannels	sumChannels
summarizeReps	summarizeReps
summarizeRepsNoFiltering	summarizeRepsNoFiltering
trim	trim
Ttest	Ttest
varAdjust	varAdjust
vennDiag	vennDiag
volcanoPlot	volcanoPlot
ZPRIMEQualControl	ZPRIMEQualControl
ZScore	ZScore
ZScorePerScreen	ZScorePerScreen
ZScorePlot	ZScorePlot
ZScorePlotTwo	ZScorePlotTwo
