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| clearMsg | clearMsg |
| clearMsg-method | clearMsg |
| clearSelection | clearSelection |
| clearSelection-method | clearSelection |
| createWindow | createWindow |
| createWindow-method | createWindow |
| cy2.edge.names | cy2.edge.names |
| CytoscapeWindow | CytoscapeWindow |
| CytoscapeWindowClass-class | Class "CytoscapeWindowClass" |
| destroyAllWindows | destroyAllWindows |
| destroyAllWindows-method | destroyAllWindows |
| destroyWindow | destroyWindow |
| destroyWindow-method | destroyWindow |
| displayGraph | displayGraph |
| displayGraph-method | displayGraph |
| dockPanel | dockPanel |
| dockPanel-method | dockPanel |
| eda | eda |
| eda.names | eda.names |
| firstNeighbors | firstNeighbors |
| firstNeighbors-method | firstNeighbors |
| floatPanel | floatPanel |
| floatPanel-method | floatPanel |
| getAllEdges | getAllEdges |
| getAllEdges-method | getAllEdges |
| getAllNodes | getAllNodes |
| getAllNodes-method | getAllNodes |
| getArrowShapes | getArrowShapes |
| getArrowShapes-method | getArrowShapes |
| getAttributeClassNames | getAttributeClassNames |
| getAttributeClassNames-method | getAttributeClassNames |
| getGraph | getGraph |
| getGraph-method | getGraph |
| getLayoutNames | getLayoutNames |
| getLayoutNames-method | getLayoutNames |
| getLineStyles | getLineStyles |
| getLineStyles-method | getLineStyles |
| getNodeShapes | getNodeShapes |
| getNodeShapes-method | getNodeShapes |
| getSelectedNodeCount | getSelectedNodeCount |
| getSelectedNodeCount-method | getSelectedNodeCount |
| getSelectedNodes | getSelectedNodes |
| getSelectedNodes-method | getSelectedNodes |
| getWindowCount | getWindowCount |
| getWindowCount-method | getWindowCount |
| getWindowList | getWindowList |
| getWindowList-method | getWindowList |
| hidePanel | hidePanel |
| hidePanel-method | hidePanel |
| hideSelectedNodes | hideSelectedNodes |
| hideSelectedNodes-method | hideSelectedNodes |
| initEdgeAttribute | initEdgeAttribute |
| initNodeAttribute | initNodeAttribute |
| layout | layout |
| layout-method | layout |
| makeRandomGraph | makeRandomGraph |
| makeSimpleGraph | makeSimpleGraph |
| msg | msg |
| msg-method | msg |
| noa | noa |
| noa.names | noa.names |
| ping | ping |
| ping-method | ping |
| redraw | redraw |
| redraw-method | redraw |
| selectNodes | selectNodes |
| selectNodes-method | selectNodes |
| sendEdgeAttributes | sendEdgeAttributes |
| sendEdgeAttributes-method | sendEdgeAttributes |
| sendEdgeAttributesDirect | sendEdgeAttributesDirect |
| sendEdgeAttributesDirect-method | sendEdgeAttributesDirect |
| sendEdges | sendEdges |
| sendEdges-method | sendEdges |
| sendNodeAttributes | sendNodeAttributes |
| sendNodeAttributes-method | sendNodeAttributes |
| sendNodeAttributesDirect | sendNodeAttributesDirect |
| sendNodeAttributesDirect-method | sendNodeAttributesDirect |
| sendNodes | sendNodes |
| sendNodes-method | sendNodes |
| setDefaultEdgeColor | setDefaultEdgeColor |
| setDefaultEdgeColor-method | setDefaultEdgeColor |
| setDefaultEdgeLineWidth | setDefaultEdgeLineWidth |
| setDefaultEdgeLineWidth-method | setDefaultEdgeLineWidth |
| setDefaultNodeBorderColor | setDefaultNodeBorderColor |
| setDefaultNodeBorderColor-method | setDefaultNodeBorderColor |
| setDefaultNodeBorderWidth | setDefaultNodeBorderWidth |
| setDefaultNodeBorderWidth-method | setDefaultNodeBorderWidth |
| setDefaultNodeColor | setDefaultNodeColor |
| setDefaultNodeColor-method | setDefaultNodeColor |
| setDefaultNodeFontSize | setDefaultNodeFontSize |
| setDefaultNodeFontSize-method | setDefaultNodeFontSize |
| setDefaultNodeLabelColor | setDefaultNodeLabelColor |
| setDefaultNodeLabelColor-method | setDefaultNodeLabelColor |
| setDefaultNodeShape | setDefaultNodeShape |
| setDefaultNodeShape-method | setDefaultNodeShape |
| setDefaultNodeSize | setDefaultNodeSize |
| setDefaultNodeSize-method | setDefaultNodeSize |
| setEdgeColorRule | setEdgeColorRule |
| setEdgeColorRule-method | setEdgeColorRule |
| setEdgeLineStyleRule | specify the line styles to be used in drawing edges |
| setEdgeLineStyleRule-method | specify the line styles to be used in drawing edges |
| setEdgeSourceArrowColorRule | Specify Rule for the Source Arrow Color |
| setEdgeSourceArrowColorRule-method | Specify Rule for the Source Arrow Color |
| setEdgeSourceArrowRule | specify the arrow types to be used at the end of an edge, at the |
| setEdgeSourceArrowRule-method | specify the arrow types to be used at the end of an edge, at the |
| setEdgeTargetArrowColorRule | Specify Rule for the Target Arrow Color |
| setEdgeTargetArrowColorRule-method | Specify Rule for the Target Arrow Color |
| setEdgeTargetArrowRule | specify the arrow types to be used at the end of an edge, at the |
| setEdgeTargetArrowRule-method | specify the arrow types to be used at the end of an edge, at the |
| setEdgeTooltipRule | setEdgeTooltipRule |
| setEdgeTooltipRule-method | setEdgeTooltipRule |
| setGraph | setGraph |
| setGraph-method | setGraph |
| setNodeBorderColorRule | setNodeBorderColorRule |
| setNodeBorderColorRule-method | setNodeBorderColorRule |
| setNodeColorRule | setNodeColorRule |
| setNodeColorRule-method | setNodeColorRule |
| setNodeLabelRule | setNodeLabelRule |
| setNodeLabelRule-method | setNodeLabelRule |
| setNodeShapeRule | setNodeShapeRule |
| setNodeShapeRule-method | setNodeShapeRule |
| setNodeSizeRule | setNodeSizeRule |
| setNodeSizeRule-method | setNodeSizeRule |
| setNodeTooltipRule | setNodeTooltipRule |
| setNodeTooltipRule-method | setNodeTooltipRule |
| setPosition | setPosition |
| setPosition-method | setPosition |
| sfn | sfn |
| sfn-method | sfn |
| unhideAll | unhideAll |
| unhideAll-method | unhideAll |
| version | version |
| version-method | version |