am.tran                 AM transformation for LPE
am.tran.half            AM transformation for LPE
base.ASE.Olig           Baseline ASE estimation for oligonucleotide
                        arrays
base.PSE.Olig           Baseline PSE estimation for oligonucleotide
                        arrays
base.error.Olig         Baseline error estimation for oligonucleotide
                        arrays
base.error.Olig.quanOnly
                        Baseline error estimation for oligonucleotide
                        arrays
boot.base.ASE.Olig      Baseline error bootstrap estimation for
                        oligonucleotide arrays
boot.base.PSE.Olig      Baseline error bootstrap estimation for
                        oligonucleotide arrays
boot.base.error.Olig    Baseline error bootstrap estimation for
                        oligonucleotide arrays
fixbound.predict.smooth.spline
                        Prediction using smoothing spine
hem                     Heterogeneous Error Model for Identification of
                        Differential Expressed
hem.eb.prior            Empirical Bayes (EB) Prior Specification
hem.fdr                 FDR Evaluation
hem.null.no             Generation of null data
hem.null.one            Generation of null data
hem.null.two            Generation of null data
hem.preproc             Preprocessing
mubcp                   Gene expression data for mouse B cell
                        development
nonpar.error.Olig       Baseline error nonparametric estimation for
                        oligonucleotide arrays
nonpar.no.error.Olig    Baseline error nonparametric estimation for
                        oligonucleotide arrays
nonpar.rep.error.Olig   Baseline error nonparametric estimation for
                        oligonucleotide arrays
par.error.Olig          Baseline error parametric estimation for
                        oligonucleotide arrays
par.no.error.Olig       Baseline error parametric estimation for
                        oligonucleotide arrays
par.rep.error.Olig      Baseline error parametric estimation for
                        oligonucleotide arrays
pbrain                  Gene expression data for primate brains
permut                  Permutation
quant.norm              Quantile normalization
quant.normal            Normalization
quant.normal2           Normalization
quant.normalize         Quantile normalization
remove.sig.genes        Remove significant genes
