GOHyperG                (DEPRECATED) Hypergeometric Tests for GO
GOHyperGResult-class    Class "GOHyperGResult"
GOLeaves                DEPRECATED Identify the leaves in a GO Graph
GOstats-defunct         Defunct Functions in GOstats Package
GOstats-package         Tools for manipulating GO and microarrays.
Ndists                  Distance matrices for the BCR/ABL and NEG
                        subgroups.
compCorrGraph           A function to compute a correlation based graph
                        from Gene Expression
compGdist               A function to compute the distance between
                        pairs of nodes in a graph.
hyperGTest              Hypergeometric Tests for GO term association
idx2dimnames            Index to Dimnames
makeGOGraph             Construct a GO Graph
notConn                 Find genes that are not connected to the
                        others.
oneGOGraph              Construct the GO graph given a set of leaves.
probeSetSummary         Summarize Probe Sets Associated with a
                        hyperGTest Result
shortestPath            Shortest Path Analysis
simLL                   Functions to compute similarities between GO
                        graphs and also between
termGraphs              Extraction and Plotting of GO Terms from a
                        GOHyperGResult Object
triadCensus             Triad Functions
