CRImage a package to classify cells and calculate tumour cellularity

Documentation for package ‘CRImage’ version 1.0.0

CRImage-package	CRImage is a package to analyze images and classify cells.
calculateCellularity	Calculation of tumour cellularity
calculateThreshold	Thresholding
classificationAperio	Classification of ScanScopeTX Slides.
classifyCells	A function to classify cells
createClassifier	Construction of a classifier
createTrainingSet	Construction of a training set
CRImage	CRImage is a package to analyze images and classify cells.
determineCellularity	Determination of cellularity
findSlices	calculates the coordinates of the subimages
kernelSmoother	A kernel smoother to classify images
localThreshold	Internal function to do local thresholding.
numberOfNeighbors	Internal function to calculate the number of neighbors of a cell.
paintCells	Coloring of classified cells
parseFinalScan	Internal function to parse CWS index files.
processAperio	Cellularity Calculation of Aperio TX Scanner
segmentCytoplasma	Internal function to segment cell cytoplasma
segmentImage	Segmentation of an image