# Convert segment data into a region by sample matrix to allow for other high level computational analyses.

## Documentation for package ‘CNTools’ version 1.6.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

CNSeg | Class "CNSeg" contains the output of DNACopy segmentation data that can
CNSeg-class | Class "CNSeg" contains the output of DNACopy segmentation data that can
diffBy | A filter that filters out features that do not differ by a set
diffBy-method | A filter that filters out features that do not differ by a set
genefilter-method | A method that filters feature based on reduced segment
genefilter-methods | A method that filters feature based on reduced segment
geneInfo | method that convert segment data into reduced segment matrix
getCor | Method that extends the cor function of stats to handle reduced segment
getCor-method | Method that extends the cor function of stats to handle reduced segment
getDist | A method that extends the generic function dist to handle reduced
getDist-method | A method that extends the generic function dist to handle reduced
getRS | method that convert segment data into reduced segment matrix
getRS-method | method that convert segment data into reduced segment matrix
madFilter | Method that filters reduced segment matrix by the mean absolute
madFilter-method | Method that filters reduced segment matrix by the mean absolute
rs | Class "RS" contains the Reduced Segment data matrix derived from the
RS-class | Class "RS" contains the Reduced Segment data matrix derived from the
rs-method | Class "RS" contains the Reduced Segment data matrix derived from the
rs<- | Class "RS" contains the Reduced Segment data matrix derived from the
rs<--method | Class "RS" contains the Reduced Segment data matrix derived from the
sampleData | Class "CNSeg" contains the output of DNACopy segmentation data that can
segBy | Class "RS" contains the Reduced Segment data matrix derived from the
segBy-method | Class "RS" contains the Reduced Segment data matrix derived from the
segList | Class "CNSeg" contains the output of DNACopy segmentation data that can
segList-method | Class "CNSeg" contains the output of DNACopy segmentation data that can
segList<- | Class "CNSeg" contains the output of DNACopy segmentation data that can
segList<--method | Class "CNSeg" contains the output of DNACopy segmentation data that can
show-method | Class "CNSeg" contains the output of DNACopy segmentation data that can
show-method | Class "RS" contains the Reduced Segment data matrix derived from the