Package: oligo
Version: 1.12.2
Title: Preprocessing tools for oligonucleotide arrays.
Author: Benilton Carvalho <carvalho@bclab.org>, Rafael A. Irizarry with
        contributions from Ben Bolstad, Vince Carey, Robert Gentleman,
        Wolfgang Huber
Maintainer: Benilton Carvalho <carvalho@bclab.org>
Depends: R (>= 2.11.0), oligoClasses (>= 1.9.41)
Imports: affyio (>= 1.15.2), affxparser (>= 1.17.3), Biobase (>=
        2.7.3), DBI (>= 0.2-4), graphics, methods, preprocessCore (>=
        1.9.0), splines, stats, utils
Enhances: ff, snow
LinkingTo: preprocessCore
Suggests: hapmap100kxba, pd.mapping50k.xba240, pd.hg18.60mer.expr,
        maqcExpression4plex, genefilter, limma, RColorBrewer
Description: A package to analyze oligonucleotide arrays
        (expression/SNP/tiling/exon) at probe-level. It currently
        supports Affymetrix (CEL files) and NimbleGen arrays (XYS
        files).
License: LGPL (>= 2)
Collate: AllGenerics.R methods-GeneFeatureSet.R
        methods-ExonFeatureSet.R methods-ExpressionFeatureSet.R
        methods-LDS.R methods-FeatureSet.R methods-SnpFeatureSet.R
        methods-SnpCnvFeatureSet.R methods-TilingFeatureSet.R
        methods-DBPDInfo.R read.celfiles.R read.xysfiles.R
        utils-general.R todo-snp.R functions-crlmm.R functions-snprma.R
        justSNPRMA.R justCRLMM.R methods-snp6.R methods-genotype.R
        zzz.R
LazyLoad: Yes
biocViews: Microarray, OneChannel, TwoChannel, Preprocessing, SNP,
        DifferentialExpression, DNAMethylation, ExonArray,
        GeneExpression, Bioinformatics, DataImport, Transcription,
        ChIPchip, CopyNumberVariants, CpGIsland
Packaged: 2010-06-07 20:38:41 UTC; biocbuild
Built: R 2.11.0; x86_64-pc-mingw32; 2010-06-08 02:51:07 UTC; windows
