Package: gene2pathway
Version: 1.6.0
Date: 2009-12-09
Title: Prediction of KEGG pathway membership for individual genes based
        on InterPro domain signatures
Author: Holger Froehlich <h.froehlich@dkfz.de>, contributions by Tim
        Beissbarth <t.beissbarth@dkfz.de>
Description: The package takes a list of genes and predicts to which
        KEGG pathway each gene maps to. This is done by looking at the
        InterPro domains of each gene. Each prediction is assigned a
        confidence score. The package also allows to predict connected
        component membership of genes within signaling pathways.
        Separate models for each organism supported by KEGG can be
        trained.
Maintainer: Marc Johannes <M.Johannes@DKFZ-Heidelberg.de>
Reference: H. Froehlich, M. Fellmann, H. Sueltmann, A. Poustka, T.
        Beissbarth, Predicting Pathway Membership via Domain
        Signatures, Bioinformatics, 24:2137-2142, 2008
Depends: R (>= 2.6.0), kernlab (>= 0.9), KEGG.db (>= 2.2.0), biomaRt
        (>= 1.12.1), KEGGSOAP (>= 1.12.0), RBGL,
        AnnotationDbi,org.Dm.eg.db
Imports: SSOAP, RCurl
LazyLoad: Yes
biocViews: Microarray, Bioinformatics, Classification,
        GraphsAndNetworks, Pathways
License: GPL (>= 2)
Packaged: 2010-04-23 08:43:52 UTC; biocbuild
Built: R 2.11.0; ; 2010-04-23 13:01:34 UTC; windows
