Package: eisa
Version: 1.0.0
Date: Apr 21, 2010
Title: Expression data analysis via the Iterative Signature Algorithm
Author: Gabor Csardi <Gabor.Csardi@unil.ch>
Maintainer: Gabor Csardi <Gabor.Csardi@unil.ch>
Description: The Iterative Signature Algorithm (ISA) is a biclustering
        method; it finds correlated blocks (transcription modules) in
        gene expression (or other tabular) data. The ISA is capable of
        finding overlapping modules and it is resilient to noise. This
        package provides a convenient interface to the ISA, using
        standard BioConductor data structures; and also contains
        various visualization tools that can be used with other
        biclustering algorithms.
Depends: methods, isa2, Biobase, AnnotationDbi, Category, genefilter,
        DBI
Suggests: igraph (>= 0.5.2), Matrix, GOstats, GO.db, KEGG.db, biclust,
        MASS, xtable, ALL, hgu95av2.db
License: GPL (>= 2)
biocViews: Classification, Visualization, Microarray, GeneExpression
Collate: AllClasses.R AllGenerics.R ISAExpressionSet-methods.R
        ISAModules-methods.R enrichment.R CHR.R GO.R KEGG.R miRNA.R
        autil.R autogen.R biclust.R eisa.R viz.R zzz.R
        generalenrichment.R
Packaged: 2010-04-23 09:11:57 UTC; biocbuild
Built: R 2.11.0; ; 2010-04-23 13:00:10 UTC; windows
