# A Hidden Markov Model for high throughput genotyping arrays

## Documentation for package ‘VanillaICE’ version 1.10.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

hmm | Application of the Viterbi algorithm to copy number and/or genotype data.
hmm.setup | Wrapper for computing emission and transition probabilities needed for fitting the hidden Markov model.
locusLevelData | Basic data elements required for the HMM
robustSds | Calculate robust estimates of the standard deviation
viterbi | Application of the Viterbi algorithm to copy number and/or genotype data.