# Condition specific detection from expression data

## Documentation for package ‘SpeCond’ version 1.2.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

createParameterMatrix | Create or Modify the SpeCond argument parameters
expressionSpeCondExample | The expression matrix example used in the SpeCond package
expSetSpeCondExample | An ExpressionSet example object used in the SpeCond package
fitNoPriorWithExclusion | Fit the expression values profile with a mixture of normal components ignoring outliers
fitPrior | Fit the expression value profiles with a mixture of normal components
getDefaultParameter | Get the default parameter to use SpeCond function
getFullHtmlSpeCondResult | Visualisation function of the SpeCond analysis results
getGeneHtmlPage | Visualise for each gene the condition-specific detection result from SpeCond
getMatrixFromExpressionSet | Obtain the expression matrix from an ExpressionSet object
getProfile | Create the condition-specific profile of specific matrix result from SpeCond
getSpecificOutliersStep1 | Detect the condition-specific as outliers in for the first step on the SpeCond procedure
getSpecificResult | Detect the condition-specific genes for the second step on the SpeCond procedure
simulatedSpeCondData | An example of simulated expression matrix used in the SpeCond package
SpeCond | The condition-specific detection function
writeGeneResult | Write a condition-specific analysis result text file
writeSpeCondResult | Write in text files the main result of the SpeCond function
writeUniqueProfileSpecificResult | Write the specific profiles from the SpeCond analysis