arrayTrend              Spatial trend of microarray spots statistic
clone.qscore            Examples of qscore objects (quality scores) to
                        apply to CGH arrays
detectSB                Spatial bias detection
flag.arrayCGH           Apply a flag to an arrayCGH
flag.summary            Summarize information about flags after array
                        normalization
flags                   Examples of flag objects to apply to CGH arrays
genome.plot             Pan-genomic representation of a normalized
                        arrayCGH
html.report             Generate an HTML report of array normalization
import                  Import raw file to an arrayCGH object
nem                     Spatial Classification by EM algorithm
norm                    Normalize an object of type arrayCGH
qscore                  Create an object of type qscore
qscore.arrayCGH         arrayCGH quality score
qscore.summary          Compute quality scores for a given arrayCGH
                        object
report.plot             Array image and a genomic representation of a
                        normalized arrayCGH
sort                    Sorting for normalized arrayCGH objects
spatial                 Examples of array-CGH data with spatial
                        artifacts
to.flag                 Create an object of type flag
