CMA-package	CMA-package
best	best
best,tuningresult-method	best
bklr	internals
bklr.predict	internals
bkreg	internals
boxplot,evaloutput-method	boxplot
care.dev	internals
care.exp	internals
characterplot	internals
classification	classification
classification,data.frame,missing,formula-method	classification-methods
classification,ExpressionSet,character,missing-method	classification-methods
classification,matrix,factor,missing-method	classification-methods
classification,matrix,numeric,missing-method	classification-methods
classification-methods	classification-methods
cloutput	cloutput-class
cloutput-class	cloutput-class
clvarseloutput	clvarseloutput-class
clvarseloutput-class	clvarseloutput-class
CMA	CMA-package
compare	compare
compare,list-method	compare-methods
compare-methods	compare-methods
compBoostCMA	compBoostCMA
compBoostCMA,data.frame,missing,formula-method	compBoostCMA-methods
compBoostCMA,ExpressionSet,character,missing-method	compBoostCMA-methods
compBoostCMA,matrix,factor,missing-method	compBoostCMA-methods
compBoostCMA,matrix,numeric,missing-method	compBoostCMA-methods
compBoostCMA-methods	compBoostCMA-methods
dldaCMA	dldaCMA
dldaCMA,data.frame,missing,formula-method	dldaCMA-methods
dldaCMA,ExpressionSet,character,missing-method	dldaCMA-methods
dldaCMA,matrix,factor,missing-method	dldaCMA-methods
dldaCMA,matrix,numeric,missing-method	dldaCMA-methods
dldaCMA-methods	dldaCMA-methods
ElasticNetCMA	ElasticNetCMA
ElasticNetCMA,data.frame,missing,formula-method	ElasticNetCMA-methods
ElasticNetCMA,ExpressionSet,character,missing-method	ElasticNetCMA-methods
ElasticNetCMA,matrix,factor,missing-method	ElasticNetCMA-methods
ElasticNetCMA,matrix,numeric,missing-method	ElasticNetCMA-methods
ElasticNetCMA-methods	ElasticNetCMA-methods
evaloutput	evaloutput-class
evaloutput-class	evaloutput-class
evaluation	evaluation
evaluation,list-method	evaluation-methods
evaluation-methods	evaluation-methods
fdaCMA	fdaCMA
fdaCMA,data.frame,missing,formula-method	fdaCMA-methods
fdaCMA,ExpressionSet,character,missing-method	fdaCMA-methods
fdaCMA,matrix,factor,missing-method	fdaCMA-methods
fdaCMA,matrix,numeric,missing-method	fdaCMA-methods
fdaCMA-methods	fdaCMA-methods
flexdaCMA	flexdaCMA
flexdaCMA,data.frame,missing,formula-method	flexdaCMA-methods
flexdaCMA,ExpressionSet,character,missing-method	flexdaCMA-methods
flexdaCMA,matrix,factor,missing-method	flexdaCMA-methods
flexdaCMA,matrix,numeric,missing-method	flexdaCMA-methods
flexdaCMA-methods	flexdaCMA-methods
ftable,cloutput-method	ftable
ftest	filter
gbmCMA	gbmCMA
gbmCMA,data.frame,missing,formula-method	gbmCMA-methods
gbmCMA,ExpressionSet,character,missing-method	gbmCMA-methods
gbmCMA,matrix,factor,missing-method	gbmCMA-methods
gbmCMA,matrix,numeric,missing-method	gbmCMA-methods
gbmCMA-methods	gbmCMA-methods
GenerateLearningsets	GenerateLearningsets
genesel	genesel-class
genesel-class	genesel-class
GeneSelection	GeneSelection
GeneSelection,data.frame,missing,formula-method	GeneSelection-methods
GeneSelection,ExpressionSet,character,missing-method	GeneSelection-methods
GeneSelection,matrix,factor,missing-method	GeneSelection-methods
GeneSelection,matrix,numeric,missing-method	GeneSelection-methods
GeneSelection-methods	GeneSelection-methods
golub	golub
golubcrit	filter
join	join
join,list-method	join-methods
join-methods	join-methods
khan	khan
knnCMA	knnCMA
knnCMA,data.frame,missing,formula-method	knnCMA-methods
knnCMA,ExpressionSet,character,missing-method	knnCMA-methods
knnCMA,matrix,factor,missing-method	knnCMA-methods
knnCMA,matrix,numeric,missing-method	knnCMA-methods
knnCMA-methods	knnCMA-methods
kruskaltest	filter
LassoCMA	LassoCMA
LassoCMA,data.frame,missing,formula-method	LassoCMA-methods
LassoCMA,ExpressionSet,character,missing-method	LassoCMA-methods
LassoCMA,matrix,factor,missing-method	LassoCMA-methods
LassoCMA,matrix,numeric,missing-method	LassoCMA-methods
LassoCMA-methods	LassoCMA-methods
ldaCMA	ldaCMA
ldaCMA,data.frame,missing,formula-method	ldaCMA-methods
ldaCMA,ExpressionSet,character,missing-method	ldaCMA-methods
ldaCMA,matrix,factor,missing-method	ldaCMA-methods
ldaCMA,matrix,numeric,missing-method	ldaCMA-methods
ldaCMA-methods	ldaCMA-methods
learningsets	learningsets-class
learningsets-class	learningsets-class
limmatest	filter
mklr	internals
mklr.predict	internals
mkreg	internals
my.care.exp	internals
nnetCMA	nnetCMA
nnetCMA,data.frame,missing,formula-method	nnetCMA-methods
nnetCMA,ExpressionSet,character,missing-method	nnetCMA-methods
nnetCMA,matrix,factor,missing-method	nnetCMA-methods
nnetCMA,matrix,numeric,missing-method	nnetCMA-methods
nnetCMA-methods	nnetCMA-methods
obsinfo	obsinfo
obsinfo,evaloutput-method	evaloutput-class
pknnCMA	pknnCMA
pknnCMA,data.frame,missing,formula-method	pknnCMA-methods
pknnCMA,ExpressionSet,character,missing-method	pknnCMA-methods
pknnCMA,matrix,factor,missing-method	pknnCMA-methods
pknnCMA,matrix,numeric,missing-method	pknnCMA-methods
pknnCMA-methods	pknnCMA-methods
Planarplot	Planarplot
Planarplot,data.frame,missing,formula-method	Planarplot-methods
Planarplot,ExpressionSet,character,missing-method	Planarplot-methods
Planarplot,matrix,factor,missing-method	Planarplot-methods
Planarplot,matrix,numeric,missing-method	Planarplot-methods
Planarplot-methods	Planarplot-methods
plot,cloutput,missing-method	plot,cloutput-method
plot,cloutput-method	plot,cloutput-method
plot,genesel,missing-method	plot,genesel-method
plot,genesel-method	plot,genesel-method
plot,tuningresult,missing-method	plot,tuningresult-method
plot,tuningresult-method	plot,tuningresult-method
plotprob	internals
plrCMA	plrCMA
plrCMA,data.frame,missing,formula-method	plrCMA-methods
plrCMA,ExpressionSet,character,missing-method	plrCMA-methods
plrCMA,matrix,factor,missing-method	plrCMA-methods
plrCMA,matrix,numeric,missing-method	plrCMA-methods
plrCMA-methods	plrCMA-methods
pls_ldaCMA	pls_ldaCMA
pls_ldaCMA,data.frame,missing,formula-method	pls_ldaCMA-methods
pls_ldaCMA,ExpressionSet,character,missing-method	pls_ldaCMA-methods
pls_ldaCMA,matrix,factor,missing-method	pls_ldaCMA-methods
pls_ldaCMA,matrix,numeric,missing-method	pls_ldaCMA-methods
pls_ldaCMA-methods	pls_ldaCMA-methods
pls_lrCMA	pls_lrCMA
pls_lrCMA,data.frame,missing,formula-method	pls_lrCMA-methods
pls_lrCMA,ExpressionSet,character,missing-method	pls_lrCMA-methods
pls_lrCMA,matrix,factor,missing-method	pls_lrCMA-methods
pls_lrCMA,matrix,numeric,missing-method	pls_lrCMA-methods
pls_lrCMA-methods	pls_lrCMA-methods
pls_rfCMA	pls_rfCMA
pls_rfCMA,data.frame,missing,formula-method	pls_rfCMA-methods
pls_rfCMA,ExpressionSet,character,missing-method	pls_rfCMA-methods
pls_rfCMA,matrix,factor,missing-method	pls_rfCMA-methods
pls_rfCMA,matrix,numeric,missing-method	pls_rfCMA-methods
pls_rfCMA-methods	pls_rfCMA-methods
pnnCMA	pnnCMA
pnnCMA,data.frame,missing,formula-method	pnnCMA-methods
pnnCMA,ExpressionSet,character,missing-method	pnnCMA-methods
pnnCMA,matrix,factor,missing-method	pnnCMA-methods
pnnCMA,matrix,numeric,missing-method	pnnCMA-methods
pnnCMA-methods	pnnCMA-methods
prediction	prediction
prediction,data.frame,missing,data.frame,formula-method	prediction-methods
prediction,ExpressionSet,character,ExpressionSet,missing-method	prediction-methods
prediction,matrix,ANY,matrix,missing-method	prediction-methods
prediction-methods	prediction-methods
predoutput	predoutput-class
predoutput-class	predoutput-class
qdaCMA	qdaCMA
qdaCMA,data.frame,missing,formula-method	qdaCMA-methods
qdaCMA,ExpressionSet,character,missing-method	qdaCMA-methods
qdaCMA,matrix,factor,missing-method	qdaCMA-methods
qdaCMA,matrix,numeric,missing-method	qdaCMA-methods
qdaCMA-methods	qdaCMA-methods
rfCMA	rfCMA
rfCMA,data.frame,missing,formula-method	rfCMA-methods
rfCMA,ExpressionSet,character,missing-method	rfCMA-methods
rfCMA,matrix,factor,missing-method	rfCMA-methods
rfCMA,matrix,numeric,missing-method	rfCMA-methods
rfCMA-methods	rfCMA-methods
rfe	filter
roc	roc
roc,cloutput-method	roc
ROCinternal	internals
roundvector	internals
rowswaps	internals
safeexp	internals
scdaCMA	scdaCMA
scdaCMA,data.frame,missing,formula-method	scdaCMA-methods
scdaCMA,ExpressionSet,character,missing-method	scdaCMA-methods
scdaCMA,matrix,factor,missing-method	scdaCMA-methods
scdaCMA,matrix,numeric,missing-method	scdaCMA-methods
scdaCMA-methods	scdaCMA-methods
show,cloutput-method	cloutput-class
show,evaloutput-method	evaloutput-class
show,genesel-method	genesel-class
show,learningsets-method	learningsets-class
show,predoutput-method	predoutput-class
show,tuningresult-method	tuningresult-class
shrinkldaCMA	shrinkldaCMA
shrinkldaCMA,data.frame,missing,formula-method	shrinkldaCMA-methods
shrinkldaCMA,ExpressionSet,character,missing-method	shrinkldaCMA-methods
shrinkldaCMA,matrix,factor,missing-method	shrinkldaCMA-methods
shrinkldaCMA,matrix,numeric,missing-method	shrinkldaCMA-methods
shrinkldaCMA-methods	shrinkldaCMA-methods
summary,evaloutput-method	summary
svmCMA	svmCMA
svmCMA,data.frame,missing,formula-method	svmCMA-methods
svmCMA,ExpressionSet,character,missing-method	svmCMA-methods
svmCMA,matrix,factor,missing-method	svmCMA-methods
svmCMA,matrix,numeric,missing-method	svmCMA-methods
svmCMA-methods	svmCMA-methods
toplist	toplist
toplist,genesel-method	toplist
ttest	filter
tune	tune
tune,data.frame,missing,formula-method	tune-methods
tune,ExpressionSet,character,missing-method	tune-methods
tune,matrix,factor,missing-method	tune-methods
tune,matrix,numeric,missing-method	tune-methods
tune-methods	tune-methods
tuningresult	tuningresult-class
tuningresult-class	tuningresult-class
varseloutput	varseloutput-class
varseloutput-class	varseloutput-class
welchtest	filter
wilcoxtest	filter
