LMGene                  LMGene main function
genediff                Gene-by-gene and posterior p-value calculation
                        function.
glog                    Generalized log transformation function
lnorm                   Lowess normalization function
lnormeS                 Function to apply lowess normalization to an
                        expression set.
neweS                   Coerce a matrix to class ExpressionSet
norm                    Normalization function
plotMeanSD              Plotting function for gene means and standard
                        deviations
psmeans                 Function to take means of probesets.
rowaov                  Gene by gene ANOVA function
sample.eS               Sample array data for LMGene
sample.ind              Sample probeset index vector
sample.mat              Sample array data for LMGene package
tranest                 Glog transformation parameter estimation
                        function
tranestAffyProbeLevel   Glog transformation parameter estimation
                        function for probe-level Affymetrix expression
                        data
transeS                 Function to apply the glog transform to an
                        expression set.
vlist                   Sample experimental/phenotype data for LMGene
                        package
