GGtools-package         GGtools Package Overview
bestCis                 extract best (or all) cis-associated eQTL from
                        a multffmgr instance
cisSnpTests             perform tests for eQTL cis to specified genes
coerce,cwSnpScreenResult,RangedData-method
                        Transform results of gwSnpTests to browser
                        tracks
diagffCC                perform a 'diagonal' cis eQTL search (only
                        check SNPs chromosomally coresident with genes)
geneRanges              construct a RangedData instance for genes
                        enumerated according to an annotation .db
                        package
geneTrack               create a RangedData structure with multffCT
                        test results (as -log10 p values by default)
gwSnpTests              methods for iterating association tests
                        (expression vs SNP) across genomes or
                        chromosomes
hla2set                 a gene set of 9 genes from human HLA2 locus
hmceuB36.2021           two chromosomes of genotype data and full
                        expression data for CEPH CEU hapmap data
makeCommonSNPs          confine the SNPs (in multiple chromosomes) in
                        all elements of a list of smlSets to the
                        largest shared subset per chromosome; test for
                        satisfaction of this condition
maxchisq-class          Class "maxchisq"
multffCT                parallelized multipopulation cis-trans eQTL
                        searches
multffManager-class     Class "multffManager"
plot,cwSnpScreenResult,missing-method
                        Methods for Function plot in Package 'GGtools'
snp130locs              prototypical function for creation of
                        IRanges-based SNP location data
snpLocs20               prototype SNP location instance for use with
                        GGtools
strMultPop              serialization of a table from Stringer's
                        multipopulation eQTL report
topSnps-methods         report on most significant SNP with gwSnpTests
                        results
