lumi-package	lumi.package
addControlData2lumi	addControlData2lumi
addNuID2lumi	addNuID2lumi
addNuId2lumi	addNuID2lumi
affyExpresso	affyExpresso
affyVstRma	affyVstRma
beadNum	LumiBatch-class
beadNum,ExpressionSet-method	LumiBatch-class
beadNum<-	LumiBatch-class
beadNum<-,ExpressionSet-method	LumiBatch-class
bgAdjust	bgAdjust
boxplot,ExpressionSet-method	boxplot-methods
boxplot-methods	boxplot-methods
boxplot.ExpressionSet	boxplot-methods
class:LumiBatch	LumiBatch-class
combine,ExpressionSet,LumiBatch-method	LumiBatch-class
combine,LumiBatch,ExpressionSet-method	LumiBatch-class
combine,LumiBatch,LumiBatch-method	LumiBatch-class
density,ExpressionSet-method	density-methods
density-methods	density-methods
density.ExpressionSet	density-methods
detection	LumiBatch-class
detection,ExpressionSet-method	LumiBatch-class
detection<-	LumiBatch-class
detection<-,ExpressionSet-method	LumiBatch-class
detectionCall	detectionCall
detectOutlier	detectOutlier
estimateLumiCV	estimateLumiCV
example.lumi	example.lumi
getChipInfo	getChipInfo
getControlData	getControlData
getControlProbe	getControlProbe
getControlType	getControlType
getHistory	LumiBatch-class
getHistory,LumiBatch-method	LumiBatch-class
getNuIDMappingInfo	getNuIDMappingInfo
hist,ExpressionSet-method	hist-methods
hist-methods	hist-methods
hist.ExpressionSet	hist-methods
id2seq	id2seq
IlluminaID2nuID	IlluminaID2nuID
initialize,LumiBatch-method	LumiBatch-class
inverseVST	inverseVST
is.nuID	is.nuID
lumi	lumi.package
lumiB	lumiB
LumiBatch	LumiBatch-class
LumiBatch-class	LumiBatch-class
lumiExpresso	lumiExpresso
lumiN	lumiN
lumiQ	lumiQ
lumiR	lumiR
lumiR.batch	lumiR.batch
lumiT	lumiT
MAplot,ExpressionSet-method	MAplot-methods
MAplot-methods	MAplot-methods
MAplot.ExpressionSet	MAplot-methods
monoSmu	monoSmu
monoSpline	monoSpline
nuID2EntrezID	nuID2EntrezID
nuID2IlluminaID	nuID2IlluminaID
nuID2probeID	nuID2probeID
nuID2RefSeqID	nuID2RefSeqID
nuID2targetID	nuID2targetID
pairs,ExpressionSet-method	pairs-methods
pairs-methods	pairs-methods
pairs.ExpressionSet	pairs-methods
plot,LumiBatch,missing-method	plot-methods
plot,LumiBatch-method	plot-methods
plot-methods	plot-methods
plot.LumiBatch	plot-methods
plotCDF	plotCDF-methods
plotCDF,ExpressionSet-method	plotCDF-methods
plotCDF-methods	plotCDF-methods
plotCDF.ExpressionSet	plotCDF-methods
plotControlData	plotControlData
plotHousekeepingGene	plotHousekeepingGene
plotSampleRelation	plotSampleRelation
plotStringencyGene	plotStringencyGene
plotVST	plotVST
probeID2nuID	probeID2nuID
produceGEOPlatformFile	produceGEOPlatformFile
produceGEOSampleInfoTemplate	produceGEOSampleInfoTemplate
produceGEOSubmissionFile	produceGEOSubmissionFile
rankinvariant	rankinvariant
rsn	rsn
sampleNames<-,LumiBatch,ANY-method	LumiBatch-class
se.exprs	LumiBatch-class
se.exprs,ExpressionSet-method	LumiBatch-class
se.exprs<-	LumiBatch-class
se.exprs<-,ExpressionSet-method	LumiBatch-class
seq2id	seq2id
show,LumiBatch-method	LumiBatch-class
ssn	ssn
summary,LumiBatch-method	LumiBatch-class
targetID2nuID	targetID2nuID
vst	vst
[,LumiBatch,ANY,ANY,ANY-method	LumiBatch-class
[,LumiBatch-method	LumiBatch-class
