annotation,Codelink-method	Nondocumented-objects
arrayNew	arrayNew
arraySize	arraySize
as.matrix.Codelink	as.matrix.Codelink
averageProbes	averageProbes
averageProbes,CodelinkSet-method	averageProbes
bkgdCorrect	bkgdCorrect
chipDevice	Nondocumented-objects
chipDevice,CodelinkSet-method	Nondocumented-objects
class::CodelinkSet	CodelinkSet-class
class::CodelinkSetUnique	CodelinkSetUnique-class
class:Codelink	Codelink-class
codCorrect	Nondocumented-objects
codCorrect,CodelinkSet-method	Nondocumented-objects
Codelink	Codelink-class
Codelink-class	Codelink-class
codelink.example	codelink.example
codelink.exprset	codelink.exprset
Codelink2eSet	Nondocumented-objects
CodelinkSet	CodelinkSet-class
CodelinkSet-class	CodelinkSet-class
CodelinkSetUnique	CodelinkSetUnique-class
CodelinkSetUnique-class	CodelinkSetUnique-class
codNormalize	Nondocumented-objects
codNormalize,CodelinkSet-method	Nondocumented-objects
codPlot	Nondocumented-objects
codPlot,Codelink-method	Nondocumented-objects
codPlot,CodelinkSet-method	Nondocumented-objects
codPlot,MArrayLM-method	Nondocumented-objects
codPreprocess	Nondocumented-objects
codPreprocess,CodelinkSet-method	Nondocumented-objects
codUniverse	Nondocumented-objects
codUniverse,Codelink-method	Nondocumented-objects
codUniverse,CodelinkSet-method	Nondocumented-objects
createWeights	createWeights
cutCV	cutCV
decDetect	decDetect
dim.Codelink	dim.Codelink
eSet2Codelink	Nondocumented-objects
exprs,CodelinkSet-method	Nondocumented-objects
fc2Cond	fc2Cond
filterSNR	Nondocumented-objects
filterSNR,Codelink-method	Nondocumented-objects
filterSNR,CodelinkSet-method	Nondocumented-objects
filterSNR,matrix-method	Nondocumented-objects
getBkg	Nondocumented-objects
getBkg,CodelinkSet-method	Nondocumented-objects
getInfo	Nondocumented-objects
getInfo,CodelinkSet-method	Nondocumented-objects
getInt	Nondocumented-objects
getInt,CodelinkSet-method	Nondocumented-objects
getSNR	Nondocumented-objects
getSNR,CodelinkSet-method	Nondocumented-objects
getType	Nondocumented-objects
guessAnnotation	Nondocumented-objects
imageCodelink	imageCodelink
logCodelink	logCodelink
meanSNR	Nondocumented-objects
meanSNR,CodelinkSet-method	Nondocumented-objects
mergeArray	mergeArray
na2false	na2false
Nondocumented-objects	Nondocumented-objects
normalize	normalize
normalize.loess	normalize.loess
normalize.median	Nondocumented-objects
plotCorrelation	plotCorrelation
plotCV	plotCV
plotDensities	plotDensities
plotDensities,Codelink-method	plotDensities
plotMA	plotMA
printHead	printHead
probeNames	Nondocumented-objects
probeNames,CodelinkSet-method	Nondocumented-objects
probeNames,CodelinkSetUnique-method	Nondocumented-objects
probeTypes	Nondocumented-objects
probeTypes,CodelinkSet-method	Nondocumented-objects
readCodelink	readCodelink
readCodelinkFiles	Nondocumented-objects
readCodelinkSet	Nondocumented-objects
readHeader	readHeader
readHeaderXLS	readHeaderXLS
reportCodelink	reportCodelink
selCV	selCV
show,Codelink-method	Codelink-class
SNR	SNR
summary,Codelink-method	Nondocumented-objects
summaryFlag	Nondocumented-objects
summaryFlag,Codelink-method	Nondocumented-objects
summaryFlag,matrix-method	Nondocumented-objects
writeCluster	Nondocumented-objects
writeCluster,Codelink-method	Nondocumented-objects
writeCluster,CodelinkSet-method	Nondocumented-objects
writeCluster,ExpressionSet-method	Nondocumented-objects
writeCluster,MArrayLM-method	Nondocumented-objects
writeCodelink	writeCodelink
writeCodelink,CodelinkSet-method	writeCodelink
[,Codelink-method	Codelink-class
