# Affymetrix chicken annotation data (chip chicken)

## Documentation for package ‘chicken.db’ version 2.3.5

## Help Pages

chicken | Bioconductor annotation data package
chicken.db | Bioconductor annotation data package
chickenACCNUM | Map Manufacturer identifiers to Accession Numbers
chickenALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
chickenCHR | Map Manufacturer IDs to Chromosomes
chickenCHRLENGTHS | A named vector for the length of each of the chromosomes
chickenCHRLOC | Map Manufacturer IDs to Chromosomal Location
chickenCHRLOCEND | Map Manufacturer IDs to Chromosomal Location
chickenENSEMBL | Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenENSEMBL2PROBE | Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenENTREZID | Map between Manufacturer Identifiers and Entrez Gene
chickenENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
chickenENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers
chickenGENENAME | Map between Manufacturer IDs and Genes
chickenGO | Map between Manufacturer IDs and Gene Ontology (GO)
chickenGO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
chickenGO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers
chickenLOCUSID | Map between Manufacturer Identifiers and Entrez Gene
chickenMAPCOUNTS | Number of mapped keys for the maps in package chicken.db
chickenORGANISM | The Organism information for chicken
chickenORGPKG | The Organism information for chicken
chickenPATH | Mappings between probe identifiers and KEGG pathway identifiers
chickenPATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
chickenPFAM | Map Manufacturer IDs to Pfam IDs
chickenPMID | Map between Manufacturer Identifiers and PubMed Identifiers
chickenPMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers
chickenPROSITE | Map Manufacturer IDs to PROSITE ID
chickenREFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers
chickenSYMBOL | Map between Manufacturer Identifiers and Gene Symbols
chickenUNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers
chickenUNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers
chickenUNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers
chicken_dbconn | Collect information about the package annotation DB
chicken_dbfile | Collect information about the package annotation DB
chicken_dbInfo | Collect information about the package annotation DB
chicken_dbschema | Collect information about the package annotation DB