\HeaderA{logRatios}{extractor for cghSet assay data}{logRatios}
\aliasA{cghSet-class}{logRatios}{cghSet.Rdash.class}
\aliasA{logRatios,cghSet-method}{logRatios}{logRatios,cghSet.Rdash.method}
\keyword{models}{logRatios}
\begin{Description}\relax
extractor for cghSet assay data
\end{Description}
\begin{Usage}
\begin{verbatim}
logRatios(cghSet)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{cghSet}] instance of \LinkA{cghSet}{cghSet.Rdash.class} class
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
gets the AssayData element
\end{Details}
\begin{Value}
matrix
\end{Value}
\begin{Author}\relax
Vince Carey <stvjc@channing.harvard.edu>
\end{Author}
\begin{Examples}
\begin{ExampleCode}
data(neveCGHmatch)
logRatios(neveCGHmatch)[1:4,1:4]
\end{ExampleCode}
\end{Examples}

