MAQCsubset            package:MAQCsubset            R Documentation

_E_x_p_e_r_i_m_e_n_t_a_l _D_a_t_a _P_a_c_k_a_g_e: _M_A_Q_C_s_u_b_s_e_t

_D_e_s_c_r_i_p_t_i_o_n:

     selected data from the MAQC project (Nature Biotechnology, Sept.
     2006)

_U_s_a_g_e:

     data(afxsubRMAES)
     data(afxsubRMA)
     data(afxsub)

_F_o_r_m_a_t:

     The format is: An 'ExpressionSetObject' with covariates:

        *  'site': from cel

        *  'samp': rna src/mixture code

        *  'repl': replicate

_N_o_t_e:

     'afxsubRMA' is an 'exprSet' (deprecated) and 'afxsub' is an
     'AffyBatch'.  'afxsubRMAES' is a proper ExpressionSet instance.

     ilmMAQCsubR is the result of applying lumiR to the files in the
     vicinity of GEO GSM122901 with filename suffixes matching those of
     the sampleNames in the set.

_E_x_a_m_p_l_e_s:

       data(afxsubRMAES)

