MAQCsubset {MAQCsubset} | R Documentation

## Experimental Data Package: MAQCsubset

### Description

selected data from the MAQC project (Nature Biotechnology, Sept. 2006)

### Usage

    data(afxsubRMAES)
    data(afxsubRMA)
    data(afxsub)

### Format

The format is: An `ExpressionSetObject` with covariates:

- `site`: from cel
- `samp`: rna src/mixture code
- `repl`: replicate

### Note

`afxsubRMA` is an `exprSet` (deprecated) and `afxsub` is an `AffyBatch`. `afxsubRMAES` is a proper ExpressionSet instance.

ilmMAQCsubR is the result of applying lumiR to the files in the vicinity of GEO GSM122901 with filename suffixes matching those of the sampleNames in the set.

### Examples

      data(afxsubRMAES)

[Package MAQCsubset version 1.0.14 Index]