scopCLASSIFICATION {scop.db}R Documentation

Map SCOP identifiers to domain classification

Description

scopCLASSIFICATION mapps SCOP entry identifier to a compact representation of a SCOP domain classification.

Details

Mappings were based on data provided by: SCOP (http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.des.scop.txt_1.73 ; http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.hie.scop.txt_1.73 ; http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.cla.scop.txt_1.73) on Release 1.73, November 2007

Examples

    # Convert to a list
    xx <- as.list(scopCLASSIFICATION)
    if(length(xx) > 0){        
        xx[2:3]
    }

[Package scop.db version 1.1.0 Index]