sc.bacelloSUBCELL {sc.bacello.db}R Documentation

Map protein identifier to the subcellular location

Description

sc.bacelloSUBCELL provides mappings between a Swss-Prot protein identifier and the protein subcellular locations.

Details

Mappings were based on data provided by: BaCelLo (http://gpcr2.biocomp.unibo.it/bacello/datasets/animals_dataset.zip ; http://gpcr2.biocomp.unibo.it/bacello/datasets/fungi_dataset.zip ; http://gpcr2.biocomp.unibo.it/bacello/datasets/plants_dataset.zip) on Swiss-Prot 48

Examples

        ## Convert to a list
        xx <- as.list(sc.bacelloSUBCELL)
        ## Get the first one
        xx[[1]]
        
        ## For the reverse map sc.bacelloSUBCELL2SPID
        ## Convert to a list
        xx <- as.list(sc.bacelloSUBCELL2SPID)
        ## Get the first one
        xx[[1]]

[Package sc.bacello.db version 1.1.0 Index]