ragene10stprobesetMAPCOUNTSpackage:ragene10stprobeset.dbR Documentation

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_D_e_s_c_r_i_p_t_i_o_n:

     ragene10stprobesetMAPCOUNTS provides the "map count" (i.e. the
     count of mapped keys) for each map in package
     ragene10stprobeset.db.

_D_e_t_a_i_l_s:

     This "map count" information is precalculated and stored in the
     package annotation DB. This allows some quality control and is
     used by the 'checkMAPCOUNTS' function defined in AnnotationDbi to
     compare and validate different methods (like 'count.mappedkeys(x)'
     or 'sum(!is.na(as.list(x)))') for getting the "map count" of a
     given map.

_S_e_e _A_l_s_o:

     'mappedkeys', 'count.mappedkeys', 'checkMAPCOUNTS'

_E_x_a_m_p_l_e_s:

       ragene10stprobesetMAPCOUNTS
       mapnames <- names(ragene10stprobesetMAPCOUNTS)
       ragene10stprobesetMAPCOUNTS[mapnames[1]]
       x <- get(mapnames[1])
       sum(!is.na(as.list(x)))
       count.mappedkeys(x)   # much faster!

       ## Check the "map count" of all the maps in package ragene10stprobeset.db
       checkMAPCOUNTS("ragene10stprobeset.db")

