Domain-Domain interaction

Description

int.domineDDI gives known and predicted domain-domain interactions from DOMINE database.

Details

Domain identifier is given as Pfam identifier. Each domain identifier maps to a named vector containing interacted domins, The vector name corresponds to the abbreviation of the source of domain-domain interaction.

Mappings were based on data provided by: DOMINE (http://domine.utdallas.edu/domine-tables.zip) on Version 1.1, February 2008

Examples

     # Convert to a list
     xx <- as.list(int.domineDDI)
     if(length(xx) > 0){
         # Gets the first five interaction list
         xx[1:5]
         # Get the first one
         xx[[1]]
     }