Mappings from a PFAM Accession number to a SCOP ID

Description

This is an R object that always contains mappings from a PFAM accession (AC) to a SCOP ID

Details

The SCOP ID along with the start point and end point have been attached to the PFAM accessions in this object.

More Details: Structural Classification of Proteins (http://scop.mrc-lmb.cam.ac.uk/scop/index.html). Reference: Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

        #To map from PFAM to SCOP:
        x <- PFAMSCOP
        # Get the PFAM identifiers that are mapped to a SCOP
        mapped_keys <- mappedkeys(x)
        # Convert to a list
        xx <- as.list(x[mapped_keys])
        if(length(xx) > 0) {
          # Get the SCOP info for the first five PFAM IDs
          xx[1:5]
          # Get the first one
          xx[[1]]
        }