Entry: golubTrain.cv
Aliases: golubTrain.cv
Keywords: datasets
Description: Examplar StAM Cross-Validation Results
URL: ../../../library/stam/html/golubTrain.cv.html

Entry: golubTrain.fit
Aliases: golubTrain.fit
Keywords: datasets
Description: Examplar StAM Model Fit
URL: ../../../library/stam/html/golubTrain.fit.html

Entry: image.stamPrediction
Aliases: image.stamPrediction
Keywords: hplot
Description: Molecular Symptoms Image on StAM Prediction
URL: ../../../library/stam/html/image.stamPrediction.html

Entry: plot.stamCV
Aliases: plot.stamCV
Keywords: hplot
Description: Plots for StAM Cross Validation
URL: ../../../library/stam/html/plot.stamCV.html

Entry: plot.stamFit
Aliases: plot.stamFit
Keywords: hplot
Description: Plots for StAM Model Fit
URL: ../../../library/stam/html/plot.stamFit.html

Entry: plot.stamPrediction
Aliases: plot.stamPrediction
Keywords: hplot
Description: Scatter Plot on Node Results
URL: ../../../library/stam/html/plot.stamPrediction.html

Entry: stam-internal
Aliases: print postorder.traverse stam.addNode writeHTML restrict.pamfit reconstruct.pamfit stam.fit.pam sum.probs stam.weightnodes stam.weightnodes.fold stam.shrink stam.trydeltas stam.collapse.scnodes stam.add.delta stam.edr.plot stam.ng.plot stam.matchcv stam.getidx getGOchildren getGOterm getGOparents getprobes getGOprobes getGOcategory getprobesymbols getprobenames stam.deviance stam.redundancy stam.preds stam.maxpreds stam.threshpreds stam.sensitivity stam.specificity stam.listgenes stam.nzgraph.rec stam.nzgraph catHTML beginHTML endHTML HTMLtag H1 H2 H3 H4 P I. B HR BR UL OL LI IMG MAP TABLE TR TH TD tableHTML HREF HREFannotation NAME GOREF AFFYREF accelerate.AFFYREF AFFYLIBS FORM TEXTFIELD HIDDEN PASSWORD TEXTAREA CHECKBOX RADIOBOX SELECTMENU BUTTON SUBMIT RESET stam.opendev stam.closedev pamr.cvfix nodelink stam.scale stam.findmin stam.refit.form stam.nodePerformanceHTML stam.ad.plot stam.nodes.plot stam.nodePredictHTML stam.pred.img.form root.dist collect.lines redraw.pred.img refit.model write.busy write.redirect stam.cgi.path stam.cgi.url stam.tmp.path busy.buffer nsc-class stam.balanced.folds stam.permute.rows permute.rows
Keywords: internal
Description: StAM Internal Function
URL: ../../../library/stam/html/stam-internal.html

Entry: stam.cv
Aliases: stam.cv
Keywords: classif
Description: Cross Validated Training for StAM
URL: ../../../library/stam/html/stam.cv.html

Entry: stam.evaluate
Aliases: stam.evaluate
Keywords: classif
Description: StAM Evaluation Procedure
URL: ../../../library/stam/html/stam.evaluate.html

Entry: stam.fit
Aliases: stam.fit
Keywords: classif
Description: Fit StAM Model to Training Data
URL: ../../../library/stam/html/stam.fit.html

Entry: stam.graph.plot
Aliases: stam.graph.plot
Keywords: hplot
Description: Draw StAM Model Fit Graph
URL: ../../../library/stam/html/stam.graph.plot.html

Entry: stam.net
Aliases: stam.net
Keywords: utilities
Description: Generate a Classifier Graph for StAM
URL: ../../../library/stam/html/stam.net.html

Entry: stam.predict
Aliases: stam.predict
Keywords: classif
Description: Predict Classifications of New Data
URL: ../../../library/stam/html/stam.predict.html

Entry: stam.rgb.colors
Aliases: stam.rgb.colors
Keywords: internal
Description: Generate a Color Gradient
URL: ../../../library/stam/html/stam.rgb.colors.html

Entry: stam.serve
Aliases: stam.serve
Keywords: hplot
Description: StAM server launch and installation
URL: ../../../library/stam/html/stam.serve.html

Entry: stam.writeHTML
Aliases: stam.writeHTML
Keywords: hplot
Description: Write StAM Output in HTML
URL: ../../../library/stam/html/stam.writeHTML.html

Entry: stamCV-class
Aliases: stamCV-class initialize,stamCV-method print,stamCV-method writeHTML,stamCV-method
Keywords: classes
Description: Cross Validation Information Generated by StAM
URL: ../../../library/stam/html/stamCV-class.html

Entry: stamEval-class
Aliases: stamEval-class initialize,stamEval-method writeHTML,stamEval-method
Keywords: classes
Description: Results of a Complete StAM Analysis
URL: ../../../library/stam/html/stamEval-class.html

Entry: stamFit-class
Aliases: stamFit-class initialize,stamFit-method print,stamFit-method writeHTML,stamFit-method
Keywords: classes
Description: Model Fit Generated by StAM
URL: ../../../library/stam/html/stamFit-class.html

Entry: stamINode-class
Aliases: stamINode-class initialize,stamINode-method print,stamINode-method writeHTML,stamINode-method
Keywords: classes
Description: Inner Nodes in Classifier Nets by StAM
URL: ../../../library/stam/html/stamINode-class.html

Entry: stamLeaf-class
Aliases: stamLeaf-class initialize,stamLeaf-method print,stamLeaf-method writeHTML,stamLeaf-method
Keywords: classes
Description: Leaf Nodes in Classifier Nets by StAM
URL: ../../../library/stam/html/stamLeaf-class.html

Entry: stamNet-class
Aliases: stamNet-class stamNet print,stamNet-method writeHTML,stamNet-method
Keywords: classes
Description: Classifier Net for StAM
URL: ../../../library/stam/html/stamNet-class.html

Entry: stamNode-class
Aliases: stamNode-class getGOchildren,stamNode-method getGOchildren,character-method getGOparents,stamNode-method getGOparents,character-method getGOterm,stamNode-method getGOterm,character-method initialize,stamNode-method print,stamNode-method writeHTML,stamNode-method
Keywords: classes
Description: Nodes in a Classifier Net by StAM
URL: ../../../library/stam/html/stamNode-class.html

Entry: stamPrediction-class
Aliases: stamPrediction-class initialize,stamPrediction-method print,stamPrediction-method writeHTML,stamPrediction-method
Keywords: classes
Description: Results of Predictions by StAM
URL: ../../../library/stam/html/stamPrediction-class.html
