SPIKE_IN95              package:spikeLI              R Documentation

_s_e_t _o_f _s_p_i_k_e-_i_n _g_e_n_e_s _c_o_n_t_a_i_n_e_d _i_n _t_h_e _H_G_U_9_5 _d_a_t_a_s_e_t

_D_e_s_c_r_i_p_t_i_o_n:

     This dataset contains a set of gene names contained in the HGU95
     dataset

_U_s_a_g_e:

     data(SPIKE_IN95)

_F_o_r_m_a_t:

     The set of spike-in gene names contained in the HGU dataset

_S_o_u_r_c_e:

     This data is experimental data extracted from the publicly
     available HGU dataset

_R_e_f_e_r_e_n_c_e_s:

     E. Carlon and T. Heim, Physica A 362, 433 (2006).

_S_e_e _A_l_s_o:

     'Ivsc', 'IvsDG', 'collapse', 'SPIKE_IN', 'hgu' , 'SPIKE_INA',
     'SPIKE_INB', 'SPIKE_INH'

_E_x_a_m_p_l_e_s:

     ## you can first check if the data matches the predicted hybridisation value according to the langmuir 
     ## value, from the intensity versus the concentration value
     Ivsc(SPIKE_IN95[1])

     ## you can then plot the value of the Intensity of the probe with the predicted value of the hybridisation
     ## according to the Delta G, value
     IvsDG(SPIKE_IN95[4],128)

     ## The collapse function will finally plot all the values of the probe set according to 
     ## the langmuir absorption theory

     collapse(SPIKE_IN95[2])

     ## By comparing the matched value and the mismatches, you will be able to identify errors which 
     ## could have done while sampling the data, or if the error happens repeatedly this will show errors 
     ## which will have happened while sequencing old data.

